JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NHSL2_chrX_71905845_72158286	0/0	t0015	9949	2	2	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0016	9952	2	0	2	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0017	9954	2	0	1	0	1	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0018	9952	2	0	0	0	0	2	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0019	9956	2	0	2	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0020	9931	2	0	0	2	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0021	9931	2	0	0	2	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0022	9931	2	1	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0023	9955	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0024	9929	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0025	9929	1	0	0	0	0	1	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0026	9931	1	0	1	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0027	9927	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0028	9933	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0029	9935	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0030	9948	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0031	9949	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0032	9961	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0033	9958	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0034	9949	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0035	9962	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0036	9957	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0037	9938	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0038	9936	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0039	9940	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0040	9927	1	0	1	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0041	9931	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0042	9931	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0043	9931	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0044	9944	1	0	1	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0045	9952	1	0	0	0	0	1	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0046	9956	1	0	1	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0047	9954	1	0	0	0	0	1	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0048	9955	1	0	0	0	1	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0049	9952	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0050	9954	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0051	9950	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0052	9949	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0053	9954	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0054	9962	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0055	9960	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0056	9960	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0057	9945	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0058	9953	1	0	1	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0059	9928	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0060	9948	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0061	9928	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0062	9929	1	0	0	0	0	1	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0063	9929	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0064	9931	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286