Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARL6IP1_chr16_18786669_18806549	0/0	t0012	1667	1	0	0	1	0	0	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	t0013	1667	1	0	0	1	0	0	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP4_chr12_122975681_122987909	1/1	t0001	310	332	68	59	154	10	39	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	t0002	310	20	20	0	0	0	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	t0003	310	2	2	0	0	0	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	t0004	310	1	0	1	0	0	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	t0005	310	1	0	0	0	0	1	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP5_chr3_69079937_69111092	1/0	t0001	1568	130	25	27	59	8	10	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0002	1568	97	18	3	68	1	7	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0003	1568	85	32	15	23	5	10	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0004	1568	43	1	1	34	0	7	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0005	1568	27	0	15	3	4	5	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/1	t0006	1568	18	0	0	16	0	1	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0007	1568	8	7	1	0	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0008	1568	6	0	0	6	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0009	1567	4	4	0	0	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0010	1568	2	0	0	0	0	2	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0011	1567	2	2	0	0	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0012	1568	1	0	0	0	0	1	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0013	1568	1	0	1	0	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0014	1568	1	0	0	1	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0015	1603	1	0	0	1	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0016	1568	1	0	1	0	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0017	1568	1	1	0	0	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0018	1567	1	1	0	0	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0019	1568	1	1	0	0	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0020	1568	1	0	0	1	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0021	1568	1	0	0	0	0	1	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0022	1568	1	1	0	0	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	t0023	1568	1	1	0	0	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP6_chr2_152713620_152767396	0/0	t0001	2562	166	18	44	77	9	18	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/1	t0002	2562	86	4	7	64	3	7	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0003	2562	46	5	16	7	3	15	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0004	2562	31	27	0	0	0	4	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0005	2562	12	10	2	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0006	2562	9	9	0	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0007	2562	3	3	0	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0008	2562	3	2	1	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0009	2562	3	3	0	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0010	2566	3	2	0	1	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0011	2563	2	2	0	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0012	2563	2	1	1	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0013	2562	2	0	0	2	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	1/0	t0014	2562	2	1	0	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0015	2562	2	2	0	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0016	2562	2	2	0	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0017	2562	1	1	0	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0018	2562	1	0	1	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0019	2562	1	0	0	0	0	1	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0020	2566	1	0	0	1	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396