JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NHSL2_chrX_71905845_72158286	0/0	t0065	9929	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0066	9929	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0067	9919	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0068	9925	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0069	9929	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0070	9939	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0071	9928	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0072	9929	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0073	9945	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0074	9930	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0075	9947	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0076	9954	1	0	0	0	0	1	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0077	9952	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0078	9952	1	0	1	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0079	9954	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0080	9927	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0081	9928	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0082	9929	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0083	9925	1	0	0	1	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHSL2_chrX_71905845_72158286	0/0	t0084	9939	1	1	0	0	0	0	copy fasta	NHSL2	chrX	71905845	72158286
NHS_chrX_17370200_17740994	0/0	t0001	4089	109	11	20	59	5	14	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0002	4089	27	21	6	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0003	4089	5	4	1	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0004	4089	3	0	1	2	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0005	4094	3	3	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0006	4090	2	1	0	1	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0007	4089	2	0	0	2	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0008	4088	2	2	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0009	4089	2	2	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0010	4089	2	2	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0011	4089	1	1	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0012	4090	1	1	0	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0013	4089	1	0	0	1	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0014	4088	1	0	0	0	0	1	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0015	4102	1	0	0	1	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0016	4087	1	0	0	1	0	0	copy fasta	NHS	chrX	17370200	17740994
NHS_chrX_17370200_17740994	0/0	t0017	4089	1	0	1	0	0	0	copy fasta	NHS	chrX	17370200	17740994
NIBAN1_chr1_184786032_184979508	0/0	t0001	4095	85	13	17	43	2	10	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/1	t0002	4097	69	18	9	30	4	7	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0003	4097	22	21	1	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0004	4096	13	5	3	0	1	4	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	1/0	t0005	4098	10	0	5	1	0	3	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0006	4096	8	7	1	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0007	4096	6	0	0	6	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0008	4095	4	4	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0009	4094	3	1	0	2	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0010	4097	3	0	0	3	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0011	4095	2	1	0	1	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0012	4096	2	2	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0013	4097	2	2	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508