JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NIBAN1_chr1_184786032_184979508	0/0	t0014	4096	2	0	1	1	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0015	4096	2	2	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0016	4095	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0017	4095	1	0	0	0	0	1	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0018	4095	1	0	0	0	1	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0019	4095	1	0	0	0	0	1	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0020	4095	1	0	0	1	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0021	4095	1	0	1	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0022	4094	1	0	0	1	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0023	4095	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0024	4096	1	0	0	1	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0025	4096	1	0	0	1	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0026	4097	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0027	4097	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0028	4096	1	0	0	1	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0029	4096	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0030	4094	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0031	4094	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0032	4095	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0033	4096	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0034	4095	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0035	4097	1	0	0	1	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0036	4096	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0037	4096	1	1	0	0	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN1_chr1_184786032_184979508	0/0	t0038	4097	1	0	0	1	0	0	copy fasta	NIBAN1	chr1	184786032	184979508
NIBAN2_chr9_127500343_127574073	0/0	t0001	1693	69	9	8	37	1	14	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0002	1693	61	12	11	27	2	9	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/1	t0003	1697	46	14	16	3	4	8	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0004	1706	33	4	7	17	1	4	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	1/0	t0005	1702	24	3	8	7	0	5	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0006	1702	22	5	1	14	0	2	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0007	1693	14	6	4	0	3	1	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0008	1693	11	9	2	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0009	1702	5	5	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0010	1702	4	3	1	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0011	1690	4	0	0	4	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0012	1693	4	1	1	0	1	1	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0013	1711	3	3	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0014	1711	3	0	0	3	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0015	1715	3	2	0	1	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0016	1708	2	0	0	2	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0017	1708	2	0	0	2	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0018	1693	2	0	0	2	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0019	1693	2	2	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0020	1697	2	0	1	0	1	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0021	1693	2	2	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0022	1711	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0023	1711	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0024	1715	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0025	1702	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073