JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NIBAN2_chr9_127500343_127574073	0/0	t0026	1702	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0027	1706	1	0	1	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0028	1720	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0029	1702	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0030	1702	1	0	1	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0031	1693	1	0	0	1	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0032	1697	1	0	0	0	1	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0033	1697	1	1	0	0	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0034	1697	1	0	0	1	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN2_chr9_127500343_127574073	0/0	t0035	1702	1	0	0	1	0	0	copy fasta	NIBAN2	chr9	127500343	127574073
NIBAN3_chr19_17522267_17558640	0/0	t0001	1821	66	1	6	51	0	8	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0002	1803	51	12	7	29	0	3	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0003	1802	47	6	14	11	7	9	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0004	1813	42	0	18	21	0	3	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0005	1817	29	2	1	23	0	3	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0006	1813	24	4	5	9	1	5	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/1	t0007	1814	20	2	7	5	2	3	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0008	1809	12	12	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0009	1815	11	11	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0010	1818	9	2	4	1	1	1	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0011	1815	6	5	0	0	0	1	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0012	1800	5	5	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0013	1810	5	5	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0014	1809	5	3	0	2	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0015	1803	4	0	1	0	0	3	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0016	1814	4	3	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0017	1818	4	1	2	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0018	1801	3	3	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	1/0	t0019	1817	3	0	0	2	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0020	1813	3	3	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0021	1801	3	2	1	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0022	1825	3	0	1	2	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0023	1810	3	3	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0024	1802	2	0	1	0	0	1	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0025	1814	2	0	0	2	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0026	1822	2	2	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0027	1817	2	2	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0028	1814	2	2	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0029	1822	2	0	0	2	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0030	1804	2	0	0	2	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0031	1815	2	0	0	2	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0032	1803	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0033	1813	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0034	1817	1	0	0	0	1	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0035	1809	1	1	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0036	1821	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0037	1825	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0038	1817	1	0	1	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0039	1813	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0040	1797	1	1	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640