JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NIBAN3_chr19_17522267_17558640	0/0	t0041	1813	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0042	1817	1	1	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0043	1817	1	0	0	0	0	1	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0044	1821	1	0	1	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0045	1829	1	0	1	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0046	1821	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0047	1814	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0048	1814	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0049	1819	1	1	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0050	1826	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0051	1803	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0052	1803	1	0	1	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0053	1807	1	0	0	0	0	1	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0054	1819	1	1	0	0	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0055	1819	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0056	1802	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NIBAN3_chr19_17522267_17558640	0/0	t0057	1821	1	0	0	1	0	0	copy fasta	NIBAN3	chr19	17522267	17558640
NICN1_chr3_49417333_49434324	0/1	t0001	2586	255	52	50	108	13	31	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0002	2586	47	26	12	1	5	3	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0003	2586	45	0	13	32	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	1/0	t0004	2586	12	11	0	0	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0005	2586	8	0	0	8	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0006	2586	3	0	0	3	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0007	2586	3	0	0	3	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0008	2586	3	0	0	3	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0009	2586	2	2	0	0	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0010	2586	1	1	0	0	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0011	2586	1	1	0	0	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0012	2586	1	1	0	0	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0013	2586	1	1	0	0	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0014	2586	1	0	1	0	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0015	2586	1	0	0	1	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0016	2586	1	1	0	0	0	0	copy fasta	NICN1	chr3	49417333	49434324
NICN1_chr3_49417333_49434324	0/0	t0017	2586	1	0	0	1	0	0	copy fasta	NICN1	chr3	49417333	49434324
NID1_chr1_235970830_236070090	1/0	t0001	2049	160	36	33	53	11	26	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/1	t0002	2049	121	19	12	77	3	9	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	t0003	2049	21	17	4	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	t0004	2049	11	7	4	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	t0005	2049	4	4	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	t0006	2049	3	3	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	t0007	2049	2	2	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	t0008	2049	2	0	2	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	t0009	2049	2	2	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	t0010	2049	1	0	1	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	t0011	2049	1	0	0	0	0	1	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	t0012	2049	1	0	0	1	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	t0013	2049	1	0	0	1	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	t0014	2049	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	t0015	2049	1	0	0	1	0	0	copy fasta	NID1	chr1	235970830	236070090
NID1_chr1_235970830_236070090	0/0	t0016	2049	1	0	0	1	0	0	copy fasta	NID1	chr1	235970830	236070090