JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NID1_chr1_235970830_236070090	0/0	t0017	2049	1	1	0	0	0	0	copy fasta	NID1	chr1	235970830	236070090
NID2_chr14_51999809_52074059	1/1	t0001	743	362	85	71	156	14	34	copy fasta	NID2	chr14	51999809	52074059
NID2_chr14_51999809_52074059	0/0	t0002	743	10	3	5	0	0	2	copy fasta	NID2	chr14	51999809	52074059
NIF3L1_chr2_200884371_200908925	1/1	t0001	556	232	73	46	79	12	20	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	t0002	556	9	9	0	0	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	t0003	556	4	4	0	0	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	t0004	556	3	3	0	0	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	t0005	556	1	1	0	0	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIF3L1_chr2_200884371_200908925	0/0	t0006	556	1	0	0	1	0	0	copy fasta	NIF3L1	chr2	200884371	200908925
NIFK_chr2_121721945_121741875	1/1	t0001	805	274	53	56	113	11	39	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	t0002	805	50	12	4	31	0	3	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	t0003	805	32	1	4	26	0	1	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	t0004	805	20	18	2	0	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	t0005	805	5	5	0	0	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	t0006	805	4	0	2	2	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	t0007	805	4	4	0	0	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	t0008	805	3	0	0	3	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	t0009	805	2	0	0	2	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	t0010	805	2	2	0	0	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	t0011	805	1	0	0	0	0	1	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	t0012	805	1	1	0	0	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	t0013	805	1	0	0	1	0	0	copy fasta	NIFK	chr2	121721945	121741875
NIFK_chr2_121721945_121741875	0/0	t0014	805	1	0	0	0	1	0	copy fasta	NIFK	chr2	121721945	121741875
NIM1K_chr5_43187225_43285850	1/1	t0001	1003	217	59	50	68	10	28	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0002	1003	42	9	5	19	3	6	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0003	1003	14	8	0	0	0	6	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0004	1003	2	1	1	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0005	1003	2	2	0	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0006	1003	2	2	0	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0007	1003	2	0	2	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0008	1003	2	1	1	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0009	1003	2	0	2	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0010	1003	1	1	0	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0011	1003	1	1	0	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0012	1003	1	1	0	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0013	1003	1	0	0	0	1	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0014	1003	1	0	0	1	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0015	1003	1	0	1	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NIM1K_chr5_43187225_43285850	0/0	t0016	1003	1	1	0	0	0	0	copy fasta	NIM1K	chr5	43187225	43285850
NINJ1_chr9_93116496_93139251	0/1	t0001	779	220	50	40	86	14	29	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0002	779	44	4	0	35	0	5	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	1/0	t0003	779	42	0	1	33	0	7	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0004	779	23	19	4	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0005	779	13	2	7	0	2	2	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0006	779	7	6	1	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0007	778	3	2	1	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0008	779	3	3	0	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0009	779	2	2	0	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0010	779	2	1	0	1	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0011	779	2	0	0	2	0	0	copy fasta	NINJ1	chr9	93116496	93139251