JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NINJ1_chr9_93116496_93139251	0/0	t0012	779	1	0	0	0	0	1	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0013	779	1	1	0	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0014	779	1	0	0	1	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0015	795	1	0	0	1	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0016	779	1	0	0	1	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0017	779	1	1	0	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ1_chr9_93116496_93139251	0/0	t0018	779	1	1	0	0	0	0	copy fasta	NINJ1	chr9	93116496	93139251
NINJ2_chr12_559296_668445	1/1	t0001	490	309	62	60	149	8	28	copy fasta	NINJ2	chr12	559296	668445
NINJ2_chr12_559296_668445	0/0	t0002	490	93	33	16	34	2	8	copy fasta	NINJ2	chr12	559296	668445
NINJ2_chr12_559296_668445	0/0	t0003	490	1	1	0	0	0	0	copy fasta	NINJ2	chr12	559296	668445
NINJ2_chr12_559296_668445	0/0	t0004	490	1	0	0	1	0	0	copy fasta	NINJ2	chr12	559296	668445
NINL_chr20_25447697_25590531	0/1	t0001	844	99	34	16	36	5	7	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	1/0	t0002	843	83	35	28	2	6	11	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	t0003	844	69	2	14	43	0	10	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	t0004	843	32	9	2	21	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	t0005	843	18	3	6	0	1	8	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	t0006	843	4	4	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	t0007	843	2	0	0	2	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	t0008	844	1	1	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	t0009	843	1	1	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NINL_chr20_25447697_25590531	0/0	t0010	844	1	1	0	0	0	0	copy fasta	NINL	chr20	25447697	25590531
NIN_chr14_50714763_50836162	1/0	t0001	3933	109	19	32	43	3	11	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0002	3932	75	7	11	35	6	16	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/1	t0003	3936	46	28	14	0	1	2	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0004	3936	12	9	1	0	0	2	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0005	3936	10	10	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0006	3936	8	8	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0007	3936	3	1	2	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0008	3932	3	0	3	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0009	3936	3	3	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0010	3933	3	0	3	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0011	3936	3	3	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0012	3936	2	2	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0013	3933	2	0	0	2	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0014	3936	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0015	3932	1	0	0	0	1	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0016	3936	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0017	3936	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0018	3932	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0019	3932	1	0	0	0	1	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0020	3932	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0021	3933	1	0	1	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0022	3933	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0023	3936	1	0	0	0	0	1	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0024	3936	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0025	3933	1	1	0	0	0	0	copy fasta	NIN	chr14	50714763	50836162
NIN_chr14_50714763_50836162	0/0	t0026	3933	1	0	0	1	0	0	copy fasta	NIN	chr14	50714763	50836162
NIP7_chr16_69334772_69348106	1/0	t0001	1513	259	36	52	136	10	24	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/1	t0002	1513	79	36	11	13	5	13	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0003	1513	16	5	2	7	1	1	copy fasta	NIP7	chr16	69334772	69348106