JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NIP7_chr16_69334772_69348106	0/0	t0004	1513	13	12	1	0	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0005	1513	7	0	0	7	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0006	1513	5	1	3	0	1	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0007	1513	4	0	2	0	1	1	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0008	1513	2	0	0	0	0	2	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0009	1513	2	0	0	0	0	2	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0010	1513	2	0	2	0	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0011	1513	1	1	0	0	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0012	1513	1	0	1	0	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0013	1513	1	1	0	0	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0014	1513	1	1	0	0	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0015	1513	1	1	0	0	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0016	1513	1	1	0	0	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0017	1513	1	0	0	1	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0018	1513	1	0	0	0	0	1	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0019	1513	1	0	0	1	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0020	1513	1	0	0	1	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIP7_chr16_69334772_69348106	0/0	t0021	1513	1	1	0	0	0	0	copy fasta	NIP7	chr16	69334772	69348106
NIPA1_chr15_22781644_22834789	0/0	t0001	5564	75	21	8	38	1	7	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/1	t0002	5567	62	2	7	33	6	13	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0003	5564	56	0	2	49	1	4	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0004	5564	52	0	23	12	4	13	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0005	5564	18	0	7	7	0	4	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0006	5564	16	2	11	0	2	1	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0007	5566	9	8	0	1	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0008	5564	8	0	0	8	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0009	5564	8	6	1	0	1	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0010	5564	8	0	0	8	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0011	5561	8	7	1	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0012	5567	7	1	6	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0013	5564	7	7	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0014	5567	7	7	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0015	5564	5	0	5	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0016	5567	5	5	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0017	5566	4	4	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0018	5564	4	4	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0019	5564	3	0	0	3	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0020	5567	3	3	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0021	5567	2	0	0	0	0	2	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0022	5564	2	2	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0023	5567	2	2	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0024	5566	2	2	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0025	5567	1	0	0	1	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0026	5567	1	0	0	1	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0027	5566	1	0	0	1	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0028	5565	1	0	1	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0029	5565	1	0	0	0	0	1	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0030	5564	1	0	0	1	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0031	5564	1	0	0	1	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0032	5564	1	0	0	1	0	0	copy fasta	NIPA1	chr15	22781644	22834789