JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NIPA1_chr15_22781644_22834789	0/0	t0033	5564	1	1	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0034	5564	1	0	0	0	0	1	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0035	5564	1	0	1	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0036	5567	1	0	0	0	0	1	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0037	5564	1	0	0	0	1	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0038	5564	1	1	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0039	5564	1	0	1	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0040	5564	1	1	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0041	5564	1	1	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0042	5564	1	0	0	1	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	1/0	t0043	5564	1	0	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0044	5566	1	0	0	1	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0045	5564	1	1	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0046	5566	1	0	1	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0047	5564	1	0	1	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0048	5567	1	1	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0049	5567	1	1	0	0	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0050	5564	1	0	0	1	0	0	copy fasta	NIPA1	chr15	22781644	22834789
NIPA1_chr15_22781644_22834789	0/0	t0051	5564	1	0	0	0	0	1	copy fasta	NIPA1	chr15	22781644	22834789
NIPA2_chr15_22833666_22873384	1/1	t0001	2145	200	14	39	116	7	22	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0002	2148	56	1	2	51	1	1	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0003	2153	31	11	10	3	2	5	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0004	2145	26	19	6	0	1	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0005	2150	17	0	0	17	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0006	2148	15	3	3	0	3	6	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0007	2145	9	7	2	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0008	2145	9	7	2	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0009	2146	8	0	0	8	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0010	2146	6	6	0	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0011	2151	5	0	3	0	0	2	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0012	2143	4	3	1	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0013	2145	4	3	1	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0014	2150	4	4	0	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0015	2150	4	3	1	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0016	2148	3	2	1	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0017	2149	3	0	0	3	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0018	2142	2	0	0	0	0	2	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0019	2148	2	0	0	2	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0020	2153	2	0	0	0	1	1	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0021	2146	2	2	0	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0022	2145	2	2	0	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0023	2145	2	0	0	2	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0024	2148	2	0	1	0	1	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0025	2145	2	0	0	2	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0026	2148	1	0	0	1	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0027	2151	1	0	0	0	0	1	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0028	2153	1	1	0	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0029	2150	1	1	0	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0030	2150	1	0	0	0	0	1	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0031	2142	1	0	0	0	0	1	copy fasta	NIPA2	chr15	22833666	22873384