JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NIPA2_chr15_22833666_22873384	0/0	t0032	2148	1	1	0	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0033	2145	1	1	0	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0034	2145	1	0	0	1	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0035	2145	1	0	0	1	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0036	2145	1	0	0	1	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPA2_chr15_22833666_22873384	0/0	t0037	2153	1	1	0	0	0	0	copy fasta	NIPA2	chr15	22833666	22873384
NIPAL1_chr4_48011772_48045173	0/0	t0001	4070	107	19	8	65	0	15	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0002	4070	78	12	14	40	3	9	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0003	4070	72	20	26	13	5	8	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/1	t0004	4070	49	3	7	31	3	4	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0005	4070	36	0	11	13	5	7	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	1/0	t0006	4070	18	16	1	0	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0007	4071	10	9	1	0	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0008	4070	9	0	0	9	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0009	4073	7	6	1	0	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0010	4070	4	0	0	3	0	1	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0011	4070	3	0	0	3	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0012	4071	3	0	3	0	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0013	4070	3	3	0	0	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0014	4070	3	0	0	3	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0015	4070	2	0	0	2	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0016	4071	2	2	0	0	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0017	4070	1	1	0	0	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0018	4071	1	0	0	1	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0019	4070	1	0	0	1	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0020	4071	1	0	0	0	0	1	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0021	4069	1	0	0	0	0	1	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0022	4070	1	1	0	0	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0023	4070	1	1	0	0	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL1_chr4_48011772_48045173	0/0	t0024	4071	1	1	0	0	0	0	copy fasta	NIPAL1	chr4	48011772	48045173
NIPAL2_chr8_98184826_98299235	0/0	t0001	3252	95	6	21	51	6	11	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	1/0	t0002	3251	75	19	12	39	2	2	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0003	3252	49	19	5	18	3	4	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/1	t0004	3251	45	10	14	10	3	7	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0005	3251	19	17	2	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0006	3251	11	1	4	1	0	5	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0007	3251	4	0	0	4	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0008	3247	4	2	2	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0009	3251	4	0	0	4	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0010	3251	3	3	0	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0011	3251	3	0	3	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0012	3251	2	0	0	2	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0013	3251	2	0	0	2	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0014	3252	2	0	2	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0015	3251	2	0	0	2	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0016	3251	1	0	0	0	0	1	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0017	3251	1	1	0	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0018	3251	1	0	0	1	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0019	3251	1	0	1	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0020	3252	1	0	0	0	0	1	copy fasta	NIPAL2	chr8	98184826	98299235