JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NIPAL2_chr8_98184826_98299235	0/0	t0021	3251	1	1	0	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0022	3251	1	1	0	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0023	3251	1	1	0	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0024	3252	1	1	0	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0025	3252	1	0	0	0	0	1	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0026	3252	1	0	1	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL2_chr8_98184826_98299235	0/0	t0027	3252	1	0	1	0	0	0	copy fasta	NIPAL2	chr8	98184826	98299235
NIPAL3_chr1_24410802_24477976	0/1	t0001	4152	89	3	13	53	4	15	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	1/0	t0002	4152	53	6	6	23	5	12	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0003	4152	50	6	12	26	2	4	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0004	4151	24	21	2	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0005	4152	12	0	0	12	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0006	4151	9	4	0	1	2	2	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0007	4151	8	7	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0008	4152	8	0	5	0	2	1	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0009	4152	6	0	6	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0010	4152	6	0	0	6	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0011	4151	5	2	0	3	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0012	4152	5	0	2	3	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0013	4151	4	2	2	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0014	4152	4	0	0	4	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0015	4153	4	0	0	4	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0016	4150	4	1	1	0	0	2	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0017	4154	4	1	3	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0018	4152	4	0	0	4	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0019	4153	4	0	0	4	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0020	4151	4	3	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0021	4154	3	3	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0022	4151	3	3	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0023	4152	3	0	0	2	1	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0024	4151	2	2	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0025	4152	2	0	1	0	0	1	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0026	4152	2	0	0	2	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0027	4153	2	0	0	2	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0028	4151	2	0	0	2	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0029	4150	2	2	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0030	4151	2	2	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0031	4153	2	0	0	1	0	1	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0032	4151	2	2	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0033	4153	2	2	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0034	4151	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0035	4153	1	0	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0036	4152	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0037	4151	1	0	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0038	4151	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0039	4163	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0040	4153	1	0	0	0	0	1	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0041	4153	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0042	4152	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0043	4152	1	0	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976