Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARL6IP6_chr2_152713620_152767396	0/0	t0021	2562	1	0	0	1	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0022	2562	1	0	0	0	1	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0023	2562	1	0	0	1	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0024	2562	1	0	0	1	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0025	2562	1	0	0	1	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0026	2562	1	0	0	1	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0027	2562	1	0	0	0	0	1	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0028	2562	1	1	0	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0029	2562	1	0	0	0	0	1	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0030	2562	1	0	0	0	0	1	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0031	2562	1	1	0	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	t0032	2562	1	0	0	1	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6_chr3_97759758_97806229	0/0	t0001	3428	227	72	39	90	7	19	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0002	3428	67	5	18	30	5	9	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0003	3428	19	0	4	7	0	8	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	1/1	t0004	3428	11	1	4	1	2	1	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0005	3429	6	1	4	0	1	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0006	3428	4	0	0	4	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0007	3428	4	0	0	3	0	1	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0008	3428	4	4	0	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0009	3428	3	0	0	3	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0010	3428	3	3	0	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0011	3428	2	0	0	0	0	2	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0012	3428	2	2	0	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0013	3428	1	0	1	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0014	3428	1	0	1	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0015	3428	1	0	0	1	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0016	3428	1	1	0	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0017	3428	1	1	0	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0018	3428	1	1	0	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0019	3428	1	0	0	1	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0020	3428	1	1	0	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0021	3428	1	0	0	0	1	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0022	3428	1	1	0	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0023	3428	1	1	0	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	t0024	3429	1	0	1	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL8A_chr1_202128404_202149737	0/1	t0001	1229	297	72	60	126	9	29	copy fasta	ARL8A	chr1	202128404	202149737
ARL8A_chr1_202128404_202149737	1/0	t0002	1229	116	13	21	59	9	13	copy fasta	ARL8A	chr1	202128404	202149737
ARL8A_chr1_202128404_202149737	0/0	t0003	1229	8	7	1	0	0	0	copy fasta	ARL8A	chr1	202128404	202149737
ARL8A_chr1_202128404_202149737	0/0	t0004	1229	4	0	0	4	0	0	copy fasta	ARL8A	chr1	202128404	202149737
ARL8A_chr1_202128404_202149737	0/0	t0005	1229	4	3	1	0	0	0	copy fasta	ARL8A	chr1	202128404	202149737
ARL8A_chr1_202128404_202149737	0/0	t0006	1229	2	2	0	0	0	0	copy fasta	ARL8A	chr1	202128404	202149737
ARL8A_chr1_202128404_202149737	0/0	t0007	1229	1	1	0	0	0	0	copy fasta	ARL8A	chr1	202128404	202149737
ARL8A_chr1_202128404_202149737	0/0	t0008	1229	1	0	0	1	0	0	copy fasta	ARL8A	chr1	202128404	202149737
ARL8A_chr1_202128404_202149737	0/0	t0009	1229	1	0	1	0	0	0	copy fasta	ARL8A	chr1	202128404	202149737
ARL8A_chr1_202128404_202149737	0/0	t0010	1229	1	0	0	1	0	0	copy fasta	ARL8A	chr1	202128404	202149737
ARL8A_chr1_202128404_202149737	0/0	t0011	1229	1	0	0	1	0	0	copy fasta	ARL8A	chr1	202128404	202149737
ARL8B_chr3_5117292_5185911	1/0	t0001	2373	137	15	30	69	4	18	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/1	t0002	2384	131	47	21	43	2	17	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0003	2373	7	7	0	0	0	0	copy fasta	ARL8B	chr3	5117292	5185911