JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NIPAL3_chr1_24410802_24477976	0/0	t0044	4154	1	0	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0045	4152	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0046	4152	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0047	4154	1	0	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0048	4152	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0049	4151	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0050	4151	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0051	4150	1	0	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0052	4151	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0053	4152	1	0	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0054	4153	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0055	4151	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0056	4150	1	0	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0057	4151	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0058	4153	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0059	4151	1	0	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0060	4154	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0061	4153	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0062	4151	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0063	4153	1	0	0	0	0	1	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0064	4150	1	0	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0065	4150	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0066	4152	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0067	4151	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0068	4150	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0069	4152	1	0	0	0	0	1	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0070	4153	1	0	0	1	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0071	4153	1	0	0	0	0	1	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0072	4152	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0073	4150	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0074	4151	1	1	0	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0075	4152	1	0	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0076	4151	1	0	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL3_chr1_24410802_24477976	0/0	t0077	4151	1	0	1	0	0	0	copy fasta	NIPAL3	chr1	24410802	24477976
NIPAL4_chr5_157455213_157479722	0/0	t0001	1871	147	46	22	57	4	18	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/1	t0002	1871	138	18	17	89	2	11	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	1/0	t0003	1871	30	1	22	1	3	2	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	t0004	1871	23	2	12	3	3	3	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	t0005	1868	12	11	1	0	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	t0006	1871	9	0	1	0	2	6	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	t0007	1871	8	1	5	0	2	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	t0008	1871	4	0	0	4	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	t0009	1871	4	1	3	0	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	t0010	1871	3	3	0	0	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	t0011	1871	2	2	0	0	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	t0012	1871	2	2	0	0	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	t0013	1871	2	2	0	0	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	t0014	1871	1	0	0	1	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	t0015	1871	1	1	0	0	0	0	copy fasta	NIPAL4	chr5	157455213	157479722
NIPAL4_chr5_157455213_157479722	0/0	t0016	1871	1	0	1	0	0	0	copy fasta	NIPAL4	chr5	157455213	157479722