JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NIT2_chr3_100329757_100366635	0/0	t0046	6401	1	1	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0047	6402	1	1	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0048	6401	1	1	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0049	6402	1	1	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0050	6403	1	0	0	0	1	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0051	6402	1	0	0	0	0	1	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0052	6401	1	0	1	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0053	6403	1	0	0	0	0	1	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0054	6403	1	0	0	0	0	1	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0055	6402	1	0	0	1	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0056	6402	1	0	0	1	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0057	6402	1	0	1	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0058	6403	1	0	0	0	1	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0059	6403	1	0	0	0	1	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0060	6403	1	0	0	1	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0061	6404	1	1	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NKAIN1_chr1_31174745_31244887	0/0	t0001	2299	116	13	30	45	10	18	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	1/1	t0002	2299	106	13	18	57	4	12	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0003	2299	95	49	14	26	0	6	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0004	2299	3	3	0	0	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0005	2299	2	0	0	2	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0006	2299	2	0	2	0	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0007	2299	2	2	0	0	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0008	2299	2	2	0	0	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0009	2299	2	0	2	0	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0010	2299	1	0	0	1	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0011	2299	1	0	1	0	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0012	2299	1	0	1	0	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0013	2299	1	0	0	1	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0014	2299	1	0	0	1	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0015	2299	1	1	0	0	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0016	2299	1	1	0	0	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	t0017	2299	1	0	0	1	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN2_chr6_123798865_124830640	0/0	t0001	2746	22	20	1	0	0	1	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0002	2746	10	4	2	1	0	3	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0003	2748	7	4	2	0	0	1	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0004	2748	4	4	0	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0005	2746	4	4	0	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0006	2746	2	2	0	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0007	2746	2	2	0	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0008	2748	1	0	0	0	0	1	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0009	2748	1	1	0	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0010	2746	1	0	1	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0011	2746	1	1	0	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0012	2746	1	0	1	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0013	2746	1	1	0	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0014	2746	1	1	0	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0015	2746	1	1	0	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0016	2748	1	0	0	1	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0017	2748	1	0	1	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640