JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NKAIN2_chr6_123798865_124830640	0/0	t0018	2748	1	1	0	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0019	2746	1	1	0	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0020	2746	1	1	0	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0021	2746	1	1	0	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	t0022	2746	1	1	0	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN3_chr8_62243854_62989904	0/0	t0001	19722	10	2	6	2	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0002	19718	4	1	2	0	1	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0003	19722	3	0	1	2	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0004	19707	3	3	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0005	19720	3	0	1	1	0	1	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0006	19723	3	0	0	2	0	1	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0007	19724	3	3	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0008	19722	3	3	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0009	19722	2	2	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0010	19726	2	0	0	2	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0011	19725	2	2	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0012	19718	2	2	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0013	19725	2	2	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0014	19722	2	2	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0015	19723	2	0	0	2	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0016	19725	2	2	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0017	19726	2	0	0	2	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0018	19725	2	2	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0019	19725	2	2	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0020	19718	2	2	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0021	19726	2	0	0	1	1	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0022	19722	2	0	0	2	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0023	19722	2	2	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0024	19712	2	0	2	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0025	19713	2	1	1	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0026	19720	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0027	19722	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0028	19725	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0029	19716	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0030	19724	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0031	19724	1	0	1	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0032	19723	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0033	19723	1	0	0	0	0	1	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0034	19723	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0035	19726	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0036	19726	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0037	19723	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0038	19726	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0039	19716	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0040	19722	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0041	19721	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0042	19715	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0043	19717	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0044	19718	1	0	1	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0045	19718	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904