JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NKAIN3_chr8_62243854_62989904	0/0	t0046	19718	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0047	19720	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0048	19720	1	0	0	0	1	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0049	19722	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0050	19722	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0051	19726	1	0	0	0	0	1	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0052	19726	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0053	19725	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0054	19723	1	0	1	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0055	19723	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0056	19719	1	0	1	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0057	19722	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0058	19722	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0059	19716	1	0	0	0	0	1	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0060	19718	1	0	0	0	1	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0061	19718	1	0	0	0	1	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0062	19720	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0063	19720	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0064	19726	1	0	0	0	0	1	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0065	19726	1	0	0	0	1	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0066	19726	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0067	19726	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0068	19724	1	0	1	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0069	19718	1	0	1	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0070	19719	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0071	19721	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0072	19723	1	0	0	0	1	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0073	19723	1	0	0	0	0	1	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0074	19723	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0075	19723	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0076	19723	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0077	19726	1	0	1	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0078	19726	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0079	19726	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0080	19722	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0081	19715	1	0	1	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0082	19723	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0083	19725	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0084	19722	1	0	1	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0085	19722	1	0	0	0	0	1	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0086	19722	1	0	1	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0087	19716	1	0	0	0	0	1	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0088	19719	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0089	19715	1	0	1	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0090	19715	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0091	19714	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0092	19721	1	0	1	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0093	19723	1	0	0	0	1	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0094	19715	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0095	19722	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904