JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NKAIN3_chr8_62243854_62989904	0/0	t0096	19713	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0097	19725	1	0	1	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0098	19718	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0099	19720	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0100	19721	1	0	0	1	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0101	19720	1	0	0	0	0	1	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0102	19722	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN3_chr8_62243854_62989904	0/0	t0103	19722	1	1	0	0	0	0	copy fasta	NKAIN3	chr8	62243854	62989904
NKAIN4_chr20_63235784_63259463	1/1	t0001	727	227	46	54	72	13	40	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0002	727	83	21	12	43	1	6	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0003	727	12	9	2	1	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0004	726	10	3	2	2	1	2	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0005	726	5	2	0	2	1	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0006	727	4	4	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0007	727	2	2	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0008	727	1	0	0	1	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0009	727	1	0	0	1	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0010	727	1	0	0	1	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0011	727	1	0	0	1	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0012	726	1	1	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0013	727	1	1	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0014	727	1	0	0	1	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0015	727	1	1	0	0	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0016	727	1	0	0	1	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0017	727	1	0	0	1	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAIN4_chr20_63235784_63259463	0/0	t0018	690	1	0	0	1	0	0	copy fasta	NKAIN4	chr20	63235784	63259463
NKAPD1_chr11_112069299_112090150	0/1	t0001	2804	135	12	47	56	3	16	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0002	2808	109	2	16	80	2	9	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	1/0	t0003	2805	24	19	4	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0004	2808	13	5	0	8	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0005	2806	11	10	1	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0006	2809	9	0	3	6	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0007	2805	9	1	0	6	0	2	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0008	2806	8	6	2	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0009	2805	7	7	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0010	2806	7	7	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0011	2804	7	0	0	7	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0012	2807	5	5	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0013	2806	5	4	1	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0014	2805	2	2	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0015	2805	2	2	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0016	2806	2	2	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0017	2807	2	0	0	2	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0018	2808	2	0	0	2	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0019	2807	2	2	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0020	2808	2	0	0	2	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0021	2806	1	1	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0022	2808	1	0	0	1	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0023	2806	1	1	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0024	2808	1	1	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150