JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NKAPD1_chr11_112069299_112090150	0/0	t0025	2809	1	1	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0026	2804	1	1	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0027	2805	1	1	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0028	2808	1	0	0	1	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0029	2807	1	1	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0030	2806	1	1	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0031	2808	1	1	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0032	2808	1	1	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0033	2804	1	0	0	1	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0034	2806	1	0	0	1	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0035	2804	1	0	0	0	0	1	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0036	2805	1	1	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0037	2805	1	0	0	1	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0038	2804	1	0	0	0	1	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPD1_chr11_112069299_112090150	0/0	t0039	2806	1	1	0	0	0	0	copy fasta	NKAPD1	chr11	112069299	112090150
NKAPL_chr6_28254297_28265958	1/1	t0001	454	416	83	70	206	16	39	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	t0002	454	1	0	1	0	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	t0003	454	1	0	0	0	0	1	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	t0004	454	1	0	1	0	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAPL_chr6_28254297_28265958	0/0	t0005	454	1	1	0	0	0	0	copy fasta	NKAPL	chr6	28254297	28265958
NKAP_chrX_119915672_119948751	0/1	t0001	4695	100	13	20	57	2	7	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0002	4695	70	4	14	42	6	4	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0003	4695	50	1	7	33	0	9	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0004	4692	33	22	3	0	0	8	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0005	4695	12	11	1	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0006	4695	8	8	0	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0007	4695	5	4	0	0	1	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0008	4695	5	5	0	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0009	4695	4	0	3	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0010	4692	3	3	0	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0011	4692	3	2	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0012	4692	2	1	1	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0013	4694	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0014	4692	1	1	0	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0015	4695	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0016	4696	1	0	0	0	0	1	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0017	4695	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0018	4695	1	1	0	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0019	4694	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0020	4695	1	1	0	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0021	4696	1	1	0	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0022	4695	1	0	0	0	0	1	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0023	4695	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	1/0	t0024	4695	1	0	0	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0025	4695	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0026	4695	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0027	4695	1	1	0	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0028	4695	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0029	4696	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0030	4692	1	1	0	0	0	0	copy fasta	NKAP	chrX	119915672	119948751