JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NKAP_chrX_119915672_119948751	0/0	t0031	4695	1	0	1	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0032	4694	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0033	4695	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0034	4695	1	0	1	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0035	4696	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0036	4693	1	0	1	0	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKAP_chrX_119915672_119948751	0/0	t0037	4696	1	0	0	1	0	0	copy fasta	NKAP	chrX	119915672	119948751
NKD1_chr16_50543396_50654249	1/0	t0001	15627	31	3	10	8	1	8	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0002	15620	27	4	11	0	3	9	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0003	15627	25	8	5	9	0	3	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0004	15620	20	1	1	16	0	2	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0005	15627	8	0	4	3	1	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0006	15620	5	5	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0007	15620	5	5	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0008	15626	5	5	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0009	15627	5	5	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0010	15621	4	1	0	2	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0011	15620	4	4	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0012	15626	3	3	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0013	15620	3	0	1	0	1	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0014	15627	3	3	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0015	15627	3	0	0	3	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0016	15620	2	2	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0017	15620	2	2	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0018	15620	2	1	1	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0019	15627	2	0	0	1	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0020	15627	2	2	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0021	15627	2	0	0	2	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0022	15627	2	0	1	0	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0023	15627	1	0	1	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0024	15620	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0025	15620	1	0	0	1	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0026	15620	1	0	0	0	1	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0027	15620	1	0	0	0	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0028	15626	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0029	15620	1	0	0	1	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0030	15621	1	0	0	1	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0031	15620	1	0	1	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0032	15620	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0033	15620	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0034	15620	1	0	0	0	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0035	15620	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0036	15620	1	0	0	0	1	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0037	15620	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0038	15620	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0039	15621	1	0	0	1	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0040	15627	1	0	1	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0041	15620	1	0	0	0	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0042	15627	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0043	15627	1	0	0	1	0	0	copy fasta	NKD1	chr16	50543396	50654249