Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARL8B_chr3_5117292_5185911	0/0	t0004	2373	5	0	0	5	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0005	2384	3	2	1	0	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0006	2384	3	0	3	0	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0007	2373	2	0	0	1	0	1	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0008	2384	2	2	0	0	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0009	2384	1	1	0	0	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0010	2373	1	0	0	0	0	1	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0011	2384	1	1	0	0	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0012	2384	1	1	0	0	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0013	2384	1	1	0	0	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0014	2373	1	0	0	1	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0015	2384	1	1	0	0	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0016	2373	1	0	0	0	0	1	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0017	2384	1	0	0	1	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0018	2373	1	0	0	1	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0019	2373	1	0	0	1	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0020	2373	1	0	1	0	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0021	2373	1	0	0	1	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	t0022	2373	1	0	0	1	0	0	copy fasta	ARL8B	chr3	5117292	5185911
ARL9_chr4_56500791_56529453	1/1	t0001	650	397	76	67	196	18	38	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	t0002	650	8	8	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	t0003	650	2	2	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	t0004	650	2	0	0	2	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	t0005	650	2	2	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	t0006	650	2	0	0	0	0	2	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	t0007	650	1	1	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	t0008	650	1	0	1	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	t0009	650	1	1	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARMC10_chr7_103070140_103104759	0/0	t0001	1374	30	4	2	22	0	2	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0002	1378	26	2	7	8	2	7	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0003	1380	24	3	12	8	1	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0004	1370	24	1	1	19	1	2	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0005	1376	22	1	5	11	2	3	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0006	1372	19	5	1	10	0	3	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0007	1378	16	0	2	12	1	1	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0008	1364	14	0	0	14	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0009	1340	12	8	4	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0010	1340	12	11	1	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	1/0	t0011	1340	11	10	0	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0012	1368	11	0	3	8	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0013	1366	9	0	0	9	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0014	1376	9	0	1	7	0	1	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0015	1374	8	0	4	2	0	2	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0016	1342	7	7	0	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0017	1382	7	1	2	3	0	1	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0018	1380	7	2	0	4	0	1	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0019	1372	7	1	2	1	0	3	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0020	1341	5	4	1	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0021	1342	5	4	1	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0022	1384	5	0	1	3	1	0	copy fasta	ARMC10	chr7	103070140	103104759