JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NKD1_chr16_50543396_50654249	0/0	t0044	15627	1	0	0	1	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0045	15627	1	0	0	1	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0046	15627	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0047	15627	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0048	15627	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/1	t0049	15627	1	0	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0050	15627	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0051	15627	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0052	15627	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0053	15627	1	0	1	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0054	15626	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0055	15627	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0056	15627	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0057	15627	1	0	0	1	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0058	15627	1	0	0	0	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0059	15627	1	0	1	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0060	15627	1	0	0	0	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0061	15627	1	0	0	0	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0062	15626	1	0	0	0	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0063	15627	1	0	0	0	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0064	15627	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0065	15627	1	0	0	0	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0066	15627	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0067	15627	1	0	0	0	0	1	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0068	15627	1	1	0	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD1_chr16_50543396_50654249	0/0	t0069	15627	1	0	1	0	0	0	copy fasta	NKD1	chr16	50543396	50654249
NKD2_chr5_1003802_1043943	0/1	t0001	827	112	9	32	53	6	11	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0002	827	100	4	23	47	5	21	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0003	827	24	21	2	0	0	1	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0004	827	14	14	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0005	827	11	2	0	9	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0006	827	10	2	3	0	2	3	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0007	827	8	1	0	5	0	2	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0008	834	6	3	2	1	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0009	827	6	3	0	3	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0010	827	5	4	1	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0011	827	3	3	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0012	827	3	3	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0013	827	3	2	1	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0014	827	2	0	0	0	0	2	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0015	827	1	1	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0016	827	1	1	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0017	827	1	0	0	1	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0018	827	1	1	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0019	834	1	0	1	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0020	827	1	0	1	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0021	816	1	0	0	0	1	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0022	827	1	0	0	1	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0023	827	1	0	1	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0024	827	1	1	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943