JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NKD2_chr5_1003802_1043943	0/0	t0025	827	1	1	0	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKD2_chr5_1003802_1043943	0/0	t0026	827	1	0	1	0	0	0	copy fasta	NKD2	chr5	1003802	1043943
NKG7_chr19_51366620_51377654	0/0	t0001	277	295	61	57	140	12	25	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	1/1	t0002	277	104	14	24	39	6	19	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	t0003	277	29	17	3	9	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	t0004	277	4	4	0	0	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	t0005	277	1	1	0	0	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKG7_chr19_51366620_51377654	0/0	t0006	277	1	1	0	0	0	0	copy fasta	NKG7	chr19	51366620	51377654
NKIRAS1_chr3_23884951_23921990	1/1	t0001	3491	108	15	15	64	5	7	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0002	3491	106	14	33	40	5	14	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0003	3491	55	10	17	18	4	6	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0004	3489	42	22	11	1	0	8	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0005	3491	31	3	2	23	0	3	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0006	3491	10	0	0	10	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0007	3491	9	0	0	3	0	6	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0008	3491	5	4	1	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0009	3489	4	2	1	0	0	1	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0010	3491	3	0	0	3	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0011	3493	3	3	0	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0012	3491	2	2	0	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0013	3489	2	2	0	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0014	3491	2	2	0	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0015	3489	1	1	0	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0016	3491	1	0	0	1	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0017	3491	1	0	1	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0018	3491	1	1	0	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0019	3491	1	0	1	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0020	3491	1	1	0	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0021	3491	1	1	0	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0022	3491	1	1	0	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0023	3491	1	1	0	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0024	3491	1	0	0	1	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0025	3491	1	0	0	0	0	1	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0026	3489	1	1	0	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0027	3491	1	1	0	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0028	3491	1	0	1	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0029	3491	1	1	0	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS1_chr3_23884951_23921990	0/0	t0030	3491	1	0	1	0	0	0	copy fasta	NKIRAS1	chr3	23884951	23921990
NKIRAS2_chr17_42015090_42030641	0/1	t0001	1877	212	44	41	100	7	19	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	t0002	1878	60	30	11	14	2	3	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	1/0	t0003	1878	25	0	1	18	2	3	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	t0004	1878	5	0	2	0	1	2	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	t0005	1877	5	5	0	0	0	0	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	t0006	1877	5	5	0	0	0	0	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	t0007	1877	3	3	0	0	0	0	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	t0008	1878	3	3	0	0	0	0	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	t0009	1877	2	0	0	2	0	0	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	t0010	1877	1	1	0	0	0	0	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	t0011	1877	1	0	0	1	0	0	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	t0012	1877	1	0	0	1	0	0	copy fasta	NKIRAS2	chr17	42015090	42030641