JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NKIRAS2_chr17_42015090_42030641	0/0	t0013	1877	1	0	1	0	0	0	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	t0014	1877	1	0	0	1	0	0	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	t0015	1877	1	0	0	1	0	0	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	t0016	1877	1	0	0	0	0	1	copy fasta	NKIRAS2	chr17	42015090	42030641
NKIRAS2_chr17_42015090_42030641	0/0	t0017	1878	1	1	0	0	0	0	copy fasta	NKIRAS2	chr17	42015090	42030641
NKPD1_chr19_45144744_45165982	1/1	t0001	2324	182	4	30	124	5	17	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0002	2324	79	22	14	32	2	9	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0003	2324	69	18	17	18	4	12	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0004	2324	12	10	2	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0005	2324	11	10	1	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0006	2323	9	0	6	0	1	2	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0007	2324	9	8	1	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0008	2324	8	8	0	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0009	2324	6	5	1	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0010	2327	5	5	0	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0011	2324	4	0	0	4	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0012	2324	4	0	1	0	3	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0013	2327	3	3	0	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0014	2324	3	0	0	0	1	2	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0015	2324	3	3	0	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0016	2324	3	0	0	3	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0017	2324	2	2	0	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0018	2324	2	0	0	0	0	2	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0019	2324	1	0	1	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0020	2324	1	0	0	0	0	1	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0021	2324	1	0	0	1	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0022	2323	1	0	0	0	0	1	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0023	2324	1	0	0	1	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0024	2324	1	0	1	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0025	2324	1	0	0	0	0	1	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0026	2324	1	0	0	0	0	1	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0027	2324	1	0	1	0	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKPD1_chr19_45144744_45165982	0/0	t0028	2324	1	0	0	1	0	0	copy fasta	NKPD1	chr19	45144744	45165982
NKTR_chr3_42595686_42653735	1/1	t0001	2877	59	5	11	29	5	7	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0002	2879	58	4	14	35	0	5	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0003	2888	44	4	3	30	1	6	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0004	2890	18	1	5	9	2	1	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0005	2881	14	2	8	1	2	1	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0006	2890	11	1	2	6	1	1	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0007	2888	9	6	1	2	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0008	2883	8	0	3	1	0	4	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0009	2884	8	7	0	1	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0010	2886	8	7	0	1	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0011	2882	7	5	1	1	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0012	2888	6	1	1	0	0	4	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0013	2892	6	1	2	3	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0014	2894	6	1	1	4	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0015	2888	5	5	0	0	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0016	2890	5	4	0	1	0	0	copy fasta	NKTR	chr3	42595686	42653735
NKTR_chr3_42595686_42653735	0/0	t0017	2892	5	1	1	2	0	1	copy fasta	NKTR	chr3	42595686	42653735