JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NKX1-2_chr10_124440243_124455035	0/0	t0005	2311	16	2	0	9	1	4	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	t0006	2311	15	0	0	15	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	t0007	2279	5	5	0	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	t0008	2279	4	0	0	4	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	t0009	2279	4	0	4	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	t0010	2279	3	3	0	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	t0011	2279	2	0	0	2	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	t0012	2279	2	0	0	2	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	t0013	2279	2	2	0	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	t0014	2311	2	0	0	0	0	2	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	t0015	2279	1	1	0	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	t0016	2279	1	1	0	0	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	t0017	2279	1	0	0	1	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX1-2_chr10_124440243_124455035	0/0	t0018	2279	1	0	0	1	0	0	copy fasta	NKX1-2	chr10	124440243	124455035
NKX2-1_chr14_36511397_36525232	0/1	t0001	986	108	15	10	63	6	13	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0002	985	63	22	14	8	3	16	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0003	985	61	2	25	28	4	2	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0004	990	48	1	19	18	2	8	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	1/0	t0005	985	48	45	2	0	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0006	984	35	1	6	26	0	2	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0007	984	7	0	0	7	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0008	989	6	0	4	1	1	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0009	987	5	0	0	4	0	1	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0010	985	5	1	2	1	0	1	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0011	984	5	0	0	5	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0012	986	3	3	0	0	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0013	985	3	3	0	0	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0014	986	3	0	0	3	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0015	990	3	0	0	3	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0016	984	3	0	0	3	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0017	988	2	1	1	0	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0018	984	2	0	0	2	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0019	986	2	2	0	0	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0020	985	2	0	0	2	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0021	986	2	0	0	1	0	1	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0022	986	2	0	2	0	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0023	988	1	0	1	0	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0024	988	1	0	0	0	1	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0025	989	1	0	0	0	1	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0026	985	1	0	0	1	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0027	986	1	0	0	1	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0028	987	1	0	0	1	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0029	985	1	0	0	1	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-1_chr14_36511397_36525232	0/0	t0030	986	1	0	0	1	0	0	copy fasta	NKX2-1	chr14	36511397	36525232
NKX2-2_chr20_21506017_21519064	0/0	t0001	1321	157	31	34	72	4	16	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	1/1	t0002	1302	142	28	21	61	10	20	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0003	1322	37	11	3	21	0	2	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0004	1321	14	11	3	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0005	1302	6	6	0	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0006	1321	5	0	2	0	2	1	copy fasta	NKX2-2	chr20	21506017	21519064