JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NKX2-2_chr20_21506017_21519064	0/0	t0007	1302	5	0	5	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0008	1321	4	4	0	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0009	1321	4	0	0	4	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0010	1321	3	0	0	3	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0011	1321	2	0	1	0	1	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0012	1302	2	0	1	0	1	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0013	1303	1	0	0	1	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0014	1322	1	1	0	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0015	1321	1	0	1	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0016	1321	1	1	0	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0017	1321	1	1	0	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0018	1321	1	1	0	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0019	1321	1	0	0	0	0	1	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0020	1321	1	0	1	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0021	1321	1	0	0	1	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0022	1302	1	0	0	1	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0023	1321	1	1	0	0	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0024	1321	1	0	0	1	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-2_chr20_21506017_21519064	0/0	t0025	1302	1	0	0	1	0	0	copy fasta	NKX2-2	chr20	21506017	21519064
NKX2-3_chr10_99527942_99541524	1/0	t0001	994	265	75	47	101	13	28	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/1	t0002	995	109	12	27	59	4	6	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	t0003	994	7	0	4	3	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	t0004	994	6	6	0	0	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	t0005	994	6	0	0	2	0	4	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	t0006	995	2	0	0	2	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	t0007	994	2	2	0	0	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	t0008	994	2	2	0	0	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	t0009	994	2	2	0	0	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	t0010	994	1	0	0	1	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	t0011	994	1	1	0	0	0	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-3_chr10_99527942_99541524	0/0	t0012	994	1	0	0	0	1	0	copy fasta	NKX2-3	chr10	99527942	99541524
NKX2-4_chr20_21390365_21402526	1/1	t0001	674	418	95	65	196	14	46	copy fasta	NKX2-4	chr20	21390365	21402526
NKX2-4_chr20_21390365_21402526	0/0	t0002	674	1	1	0	0	0	0	copy fasta	NKX2-4	chr20	21390365	21402526
NKX2-4_chr20_21390365_21402526	0/0	t0003	674	1	0	1	0	0	0	copy fasta	NKX2-4	chr20	21390365	21402526
NKX2-5_chr5_173227109_173240206	1/1	t0001	584	334	58	56	181	9	28	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	t0002	584	87	29	19	21	5	13	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	t0003	584	3	3	0	0	0	0	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	t0004	584	2	2	0	0	0	0	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	t0005	584	1	0	0	1	0	0	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	t0006	584	1	0	0	1	0	0	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	t0007	584	1	0	0	0	0	1	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-5_chr5_173227109_173240206	0/0	t0008	584	1	0	1	0	0	0	copy fasta	NKX2-5	chr5	173227109	173240206
NKX2-6_chr8_23696740_23711756	0/0	t0001	870	170	30	19	113	3	5	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/1	t0002	870	76	12	25	20	1	17	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	1/0	t0003	870	75	21	17	13	9	14	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0004	871	71	2	16	40	3	10	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0005	870	16	15	1	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0006	870	4	4	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0007	870	3	3	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0008	870	3	0	0	3	0	0	copy fasta	NKX2-6	chr8	23696740	23711756