JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NKX2-6_chr8_23696740_23711756	0/0	t0009	871	2	0	0	2	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0010	870	2	2	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0011	870	2	2	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0012	870	1	1	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0013	870	1	1	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0014	871	1	0	1	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0015	870	1	1	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0016	870	1	0	0	1	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0017	870	1	1	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0018	870	1	1	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0019	870	1	1	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0020	870	1	1	0	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-6_chr8_23696740_23711756	0/0	t0021	870	1	0	1	0	0	0	copy fasta	NKX2-6	chr8	23696740	23711756
NKX2-8_chr14_36575004_36587614	1/1	t0001	1124	279	54	49	133	10	31	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	t0002	1124	106	3	22	64	8	9	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	t0003	1124	29	26	2	0	0	1	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	t0004	1124	5	5	0	0	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	t0005	1124	5	4	1	0	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	t0006	1124	2	0	0	0	0	2	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	t0007	1124	1	0	0	1	0	0	copy fasta	NKX2-8	chr14	36575004	36587614
NKX2-8_chr14_36575004_36587614	0/0	t0008	1124	1	0	0	0	0	1	copy fasta	NKX2-8	chr14	36575004	36587614
NKX3-1_chr8_23673697_23687938	0/1	t0001	2563	158	5	32	92	12	16	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	1/0	t0002	2574	71	8	8	47	0	7	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0003	2564	22	5	6	8	0	3	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0004	2574	16	7	2	3	1	3	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0005	2575	15	1	3	11	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0006	2561	13	10	3	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0007	2568	13	5	7	0	0	1	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0008	2576	13	2	5	1	2	3	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0009	2575	10	8	0	1	0	1	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0010	2575	8	6	2	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0011	2564	7	6	1	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0012	2569	5	1	2	0	0	2	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0013	2577	5	5	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0014	2562	4	1	0	3	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0015	2578	3	3	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0016	2576	3	0	2	0	0	1	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0017	2566	2	0	0	2	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0018	2567	2	0	0	1	0	1	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0019	2576	2	1	0	0	0	1	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0020	2563	2	0	0	2	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0021	2574	2	0	2	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0022	2577	2	0	1	0	0	1	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0023	2568	2	0	2	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0024	2564	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0025	2564	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0026	2567	1	0	0	0	1	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0027	2571	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0028	2569	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0029	2574	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938