JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NKX3-1_chr8_23673697_23687938	0/0	t0030	2574	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0031	2571	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0032	2575	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0033	2575	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0034	2562	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0035	2562	1	0	0	1	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0036	2563	1	0	1	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0037	2565	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0038	2563	1	0	0	0	0	1	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0039	2563	1	0	0	1	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0040	2565	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0041	2567	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0042	2569	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0043	2568	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0044	2569	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0045	2569	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0046	2573	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0047	2563	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0048	2573	1	1	0	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0049	2575	1	0	1	0	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0050	2576	1	0	0	0	0	1	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0051	2575	1	0	0	0	0	1	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0052	2572	1	0	0	0	0	1	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0053	2574	1	0	0	1	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0054	2575	1	0	0	1	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-1_chr8_23673697_23687938	0/0	t0055	2574	1	0	0	1	0	0	copy fasta	NKX3-1	chr8	23673697	23687938
NKX3-2_chr4_13535830_13549508	0/1	t0001	1258	268	11	67	132	14	43	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	t0002	1258	61	32	8	12	4	5	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	1/0	t0003	1258	37	35	1	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	t0004	1258	6	6	0	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	t0005	1258	5	4	1	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	t0006	1258	5	5	0	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	t0007	1258	4	4	0	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	t0008	1258	1	1	0	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	t0009	1258	1	0	1	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	t0010	1258	1	0	1	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX3-2_chr4_13535830_13549508	0/0	t0011	1258	1	0	1	0	0	0	copy fasta	NKX3-2	chr4	13535830	13549508
NKX6-1_chr4_84486985_84504292	1/1	t0001	2369	165	13	37	91	5	17	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0002	2369	102	15	25	50	3	9	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0003	2369	49	18	6	15	1	9	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0004	2369	34	18	1	14	1	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0005	2369	23	0	3	20	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0006	2369	8	7	1	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0007	2369	8	2	0	6	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0008	2369	7	7	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0009	2369	7	0	0	7	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0010	2369	6	2	2	1	0	1	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0011	2369	5	5	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0012	2369	3	3	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0013	2369	2	2	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292