JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NKX6-1_chr4_84486985_84504292	0/0	t0014	2369	2	0	2	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0015	2369	1	0	0	1	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0016	2369	1	0	0	1	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0017	2369	1	0	1	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0018	2369	1	1	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0019	2369	1	1	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0020	2369	1	1	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0021	2369	1	1	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0022	2369	1	0	0	0	0	1	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0023	2369	1	0	0	1	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0024	2369	1	0	0	0	0	1	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0025	2369	1	0	0	1	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0026	2369	1	0	0	1	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0027	2369	1	1	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0028	2369	1	0	0	1	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-1_chr4_84486985_84504292	0/0	t0029	2369	1	1	0	0	0	0	copy fasta	NKX6-1	chr4	84486985	84504292
NKX6-2_chr10_132778181_132791147	0/0	t0001	1935	201	36	33	93	14	25	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	1/0	t0002	1935	51	37	9	0	2	2	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/1	t0003	1940	49	2	7	31	2	6	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0004	1940	36	0	10	23	0	3	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0005	1940	2	0	1	0	0	1	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0006	1935	2	2	0	0	0	0	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0007	1916	1	0	0	0	0	1	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0008	1940	1	0	0	0	0	1	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0009	1935	1	0	0	1	0	0	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0010	1935	1	1	0	0	0	0	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0011	1935	1	1	0	0	0	0	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0012	1935	1	1	0	0	0	0	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0013	1935	1	0	1	0	0	0	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0014	1935	1	0	0	0	0	1	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0015	1935	1	0	0	0	0	1	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0016	1940	1	0	0	0	0	1	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0017	1935	1	1	0	0	0	0	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0018	1940	1	1	0	0	0	0	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0019	1940	1	1	0	0	0	0	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0020	1935	1	1	0	0	0	0	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-2_chr10_132778181_132791147	0/0	t0021	1935	1	0	1	0	0	0	copy fasta	NKX6-2	chr10	132778181	132791147
NKX6-3_chr8_41640177_41655817	1/0	t0001	1598	92	22	13	46	1	9	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0002	1594	85	22	17	34	4	8	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0003	1598	82	3	18	45	6	10	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0004	1594	81	13	16	35	5	12	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0005	1594	17	12	0	5	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0006	1594	17	11	0	4	1	1	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0007	1594	10	0	0	10	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0008	1594	9	0	2	7	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0009	1598	7	2	2	2	0	1	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0010	1594	5	0	0	5	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0011	1594	4	1	2	0	0	1	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0012	1598	3	0	0	3	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0013	1598	3	1	2	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817