JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NKX6-3_chr8_41640177_41655817	0/0	t0014	1598	2	2	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0015	1598	2	2	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/1	t0016	1594	2	0	0	0	1	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0017	1599	2	0	0	2	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0018	1594	1	0	1	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0019	1594	1	0	0	1	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0020	1594	1	0	1	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0021	1594	1	1	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0022	1594	1	1	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0023	1594	1	0	0	0	0	1	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0024	1598	1	0	0	1	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0025	1598	1	1	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0026	1599	1	1	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0027	1594	1	0	0	0	0	1	copy fasta	NKX6-3	chr8	41640177	41655817
NKX6-3_chr8_41640177_41655817	0/0	t0028	1594	1	1	0	0	0	0	copy fasta	NKX6-3	chr8	41640177	41655817
NLE1_chr17_35123730_35147303	0/0	t0001	3736	274	70	52	114	6	32	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	1/1	t0002	3736	53	9	14	16	4	8	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0003	3738	33	0	0	32	0	1	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0004	3736	12	0	4	0	4	4	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0005	3736	3	3	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0006	3736	3	0	0	3	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0007	3736	3	3	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0008	3736	2	2	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0009	3736	2	2	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0010	3736	2	1	0	1	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0011	3736	2	0	0	2	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0012	3738	1	0	0	1	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0013	3736	1	1	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0014	3738	1	1	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0015	3736	1	0	1	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0016	3736	1	1	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0017	3736	1	0	1	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0018	3736	1	1	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0019	3736	1	1	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0020	3736	1	1	0	0	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0021	3736	1	0	0	0	0	1	copy fasta	NLE1	chr17	35123730	35147303
NLE1_chr17_35123730_35147303	0/0	t0022	3736	1	0	0	1	0	0	copy fasta	NLE1	chr17	35123730	35147303
NLGN1_chr3_173392744_174299372	0/0	t0001	13710	3	0	1	1	0	1	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0002	13708	2	1	1	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0003	13707	2	2	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0004	13703	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0005	13734	1	0	0	0	0	1	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0006	13711	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0007	13707	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0008	13703	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0009	13703	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0010	13704	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0011	13704	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0012	13701	1	0	1	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0013	13701	1	0	0	0	0	1	copy fasta	NLGN1	chr3	173392744	174299372