JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NLGN1_chr3_173392744_174299372	0/0	t0014	13700	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0015	13700	1	0	0	1	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0016	13710	1	0	0	0	0	1	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0017	13708	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0018	13708	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0019	13708	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0020	13700	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0021	13695	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0022	13708	1	0	1	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0023	13734	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0024	13704	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0025	13710	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0026	13707	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0027	13701	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0028	13708	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0029	13760	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0030	13739	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0031	13703	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0032	13704	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0033	13700	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0034	13708	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0035	13707	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0036	13695	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0037	13708	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0038	13707	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0039	13736	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN1_chr3_173392744_174299372	0/0	t0040	13703	1	1	0	0	0	0	copy fasta	NLGN1	chr3	173392744	174299372
NLGN2_chr17_7402845_7424860	0/0	t0001	2473	126	6	18	83	3	16	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0002	2472	62	41	7	6	3	5	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0003	2474	46	0	12	31	0	3	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/1	t0004	2473	31	0	12	14	3	1	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0005	2473	25	15	2	7	1	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0006	2473	22	11	1	2	0	8	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0007	2474	13	1	6	4	0	2	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0008	2473	12	0	5	3	2	2	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0009	2473	7	0	1	6	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0010	2474	6	4	1	1	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0011	2473	5	0	1	2	1	1	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0012	2473	3	0	3	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0013	2473	3	3	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0014	2476	2	2	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0015	2474	2	0	1	0	1	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0016	2473	2	0	1	0	0	1	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0017	2474	2	2	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0018	2474	2	0	2	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0019	2474	2	2	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0020	2474	2	0	0	2	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0021	2474	2	0	0	0	0	2	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0022	2475	2	0	0	1	0	1	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0023	2472	2	0	2	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860