JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NLGN2_chr17_7402845_7424860	0/0	t0024	2472	2	2	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0025	2472	2	0	2	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0026	2474	2	0	0	2	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0027	2477	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0028	2477	1	0	1	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0029	2475	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0030	2476	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0031	2474	1	0	1	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0032	2473	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0033	2472	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0034	2473	1	0	1	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0035	2473	1	0	0	0	0	1	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0036	2474	1	0	0	1	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0037	2474	1	0	1	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0038	2474	1	0	1	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0039	2475	1	0	0	0	0	1	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0040	2474	1	0	0	1	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0041	2473	1	0	0	1	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0042	2473	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0043	2473	1	0	0	1	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0044	2473	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0045	2473	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0046	2472	1	0	0	0	0	1	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0047	2473	1	1	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0048	2473	1	0	0	0	0	1	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0049	2473	1	0	0	1	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0050	2473	1	0	0	0	1	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0051	2473	1	0	0	1	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0052	2474	1	0	0	1	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0053	2473	1	0	0	0	1	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0054	2473	1	0	1	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0055	2473	1	0	1	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	1/0	t0056	2473	1	0	0	0	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN2_chr17_7402845_7424860	0/0	t0057	2474	1	0	0	1	0	0	copy fasta	NLGN2	chr17	7402845	7424860
NLGN3_chrX_71139841_71176201	1/1	t0001	1429	178	31	35	78	9	23	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	t0002	1431	67	37	21	4	0	5	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	t0003	1433	11	9	2	0	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	t0004	1430	7	0	1	6	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	t0005	1432	5	5	0	0	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	t0006	1430	3	0	1	2	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	t0007	1429	1	0	1	0	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	t0008	1426	1	0	0	1	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	t0009	1431	1	0	0	0	0	1	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	t0010	1428	1	0	0	1	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	t0011	1428	1	0	0	0	0	1	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	t0012	1429	1	0	0	1	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	t0013	1420	1	0	0	1	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN4X_chrX_5885042_6233867	0/1	t0001	3408	59	0	7	40	3	8	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	1/0	t0002	3408	27	3	4	17	0	2	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	t0003	3408	19	0	1	15	2	1	copy fasta	NLGN4X	chrX	5885042	6233867