JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NLN_chr5_65717205_65834283	0/0	t0031	6534	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0032	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0033	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0034	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0035	6537	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0036	6537	1	0	1	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0037	6538	1	0	0	1	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0038	6538	1	0	1	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0039	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0040	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0041	6537	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0042	6537	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0043	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0044	6537	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0045	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0046	6538	1	0	0	1	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0047	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0048	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0049	6537	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0050	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0051	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0052	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0053	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0054	6538	1	0	1	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0055	6548	1	0	1	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0056	6538	1	0	0	0	0	1	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0057	6538	1	0	0	1	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0058	6537	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLRC3_chr16_3534033_3582403	0/0	t0001	3216	86	11	22	39	4	10	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0002	3216	85	15	11	49	1	9	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0003	3216	45	4	7	29	1	4	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0004	3216	25	14	0	8	0	3	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0005	3216	22	0	4	13	2	3	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0006	3216	19	2	4	12	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	1/1	t0007	3216	15	0	9	0	4	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0008	3216	14	4	3	2	1	4	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0009	3216	13	0	1	12	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0010	3216	9	9	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0011	3216	7	5	2	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0012	3216	3	1	2	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0013	3216	3	0	1	1	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0014	3216	3	3	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0015	3216	3	0	0	3	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0016	3216	3	3	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0017	3216	2	1	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0018	3216	2	2	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0019	3216	2	2	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0020	3216	2	2	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0021	3216	2	2	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0022	3216	2	2	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403