JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NLRC3_chr16_3534033_3582403	0/0	t0023	3216	2	0	2	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0024	3216	2	0	0	0	0	2	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0025	3216	2	2	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0026	3216	2	2	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0027	3216	2	2	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0028	3216	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0029	3216	1	0	1	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0030	3216	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0031	3216	1	0	1	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0032	3216	1	0	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0033	3216	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0034	3216	1	0	0	0	1	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0035	3216	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0036	3216	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0037	3216	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0038	3216	1	0	1	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0039	3216	1	0	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0040	3216	1	0	1	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0041	3216	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0042	3216	1	0	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0043	3216	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0044	3216	1	0	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0045	3216	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	t0046	3216	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC4_chr2_32219453_32269886	0/1	t0001	288	233	69	44	87	9	23	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	1/0	t0002	288	158	21	25	93	5	13	copy fasta	NLRC4	chr2	32219453	32269886
NLRC4_chr2_32219453_32269886	0/0	t0003	288	3	2	1	0	0	0	copy fasta	NLRC4	chr2	32219453	32269886
NLRC5_chr16_56984557_57088520	0/1	t0001	1181	219	36	45	110	11	16	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	1/0	t0002	1181	67	13	16	26	2	9	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0003	1181	59	1	12	39	1	6	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0004	1181	38	20	4	6	1	7	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0005	1181	12	12	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0006	1181	4	0	0	0	0	4	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0007	1181	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0008	1181	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0009	1181	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0010	1181	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0011	1181	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0012	1181	2	2	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0013	1181	2	0	1	0	1	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0014	1203	1	1	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0015	1181	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0016	1181	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0017	1181	1	0	0	0	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0018	1181	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0019	1181	1	1	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0020	1181	1	1	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0021	1181	1	1	0	0	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0022	1181	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520
NLRC5_chr16_56984557_57088520	0/0	t0023	1203	1	0	0	1	0	0	copy fasta	NLRC5	chr16	56984557	57088520