JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NLRC5_chr16_56984557_57088520	0/0	t0024	1181	1	0	0	0	0	1	copy fasta	NLRC5	chr16	56984557	57088520
NLRP10_chr11_7952537_7970447	0/0	t0001	2355	234	19	57	128	8	22	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0002	2354	70	13	6	42	4	5	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0003	2355	25	10	0	5	3	7	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/1	t0004	2355	24	7	5	11	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0005	2355	17	6	5	0	3	3	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0006	2355	14	2	1	10	0	1	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0007	2355	10	0	0	10	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0008	2355	7	6	1	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0009	2355	6	6	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0010	2355	5	5	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0011	2355	4	4	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0012	2355	3	0	2	0	0	1	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0013	2355	3	3	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0014	2355	3	3	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0015	2354	3	0	0	0	0	3	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0016	2355	2	2	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0017	2355	2	2	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0018	2355	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0019	2355	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0020	2355	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0021	2355	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0022	2355	1	0	0	0	0	1	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0023	2355	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0024	2355	1	0	0	0	0	1	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0025	2355	1	0	0	1	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0026	2355	1	0	1	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0027	2355	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0028	2355	1	0	0	1	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0029	2355	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0030	2355	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0031	2354	1	0	0	0	0	1	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0032	2354	1	0	0	1	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0033	2354	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0034	2355	1	0	0	0	0	1	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0035	2355	1	1	0	0	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP10_chr11_7952537_7970447	0/0	t0036	2354	1	0	0	1	0	0	copy fasta	NLRP10	chr11	7952537	7970447
NLRP11_chr19_55780399_55836999	0/0	t0001	324	103	35	16	48	1	3	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0002	322	86	4	23	35	11	13	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	1/1	t0003	326	62	9	6	31	4	10	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0004	318	47	16	6	22	0	3	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0005	328	24	6	3	13	0	2	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0006	324	23	1	6	9	1	6	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0007	322	22	6	2	11	1	2	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0008	326	17	0	4	13	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0009	330	9	0	2	6	0	1	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0010	318	8	0	0	8	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0011	320	8	3	0	4	0	1	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0012	320	6	2	1	3	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0013	328	5	4	0	1	0	0	copy fasta	NLRP11	chr19	55780399	55836999