JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NLRP11_chr19_55780399_55836999	0/0	t0014	326	4	3	1	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0015	328	3	2	1	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0016	332	3	0	1	2	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0017	318	2	0	0	2	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0018	316	2	2	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0019	318	2	0	1	0	0	1	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0020	320	2	1	1	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0021	304	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0022	306	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0023	314	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0024	312	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0025	318	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP11_chr19_55780399_55836999	0/0	t0026	324	1	1	0	0	0	0	copy fasta	NLRP11	chr19	55780399	55836999
NLRP12_chr19_53788741_53829314	0/0	t0001	449	179	22	31	99	10	17	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/1	t0002	449	96	45	16	24	4	6	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	1/0	t0003	449	79	14	16	31	4	13	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	t0004	449	20	4	1	12	0	3	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	t0005	449	18	3	1	9	0	5	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	t0006	449	9	3	2	3	0	1	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	t0007	449	4	4	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	t0008	449	2	2	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	t0009	449	2	0	2	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	t0010	449	1	0	1	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	t0011	449	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	t0012	449	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	t0013	449	1	0	0	0	0	1	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	t0014	449	1	0	0	1	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	t0015	449	1	1	0	0	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP12_chr19_53788741_53829314	0/0	t0016	449	1	0	0	1	0	0	copy fasta	NLRP12	chr19	53788741	53829314
NLRP13_chr19_55890945_55937336	1/1	t0001	26	440	96	78	200	18	46	copy fasta	NLRP13	chr19	55890945	55937336
NLRP14_chr11_7015479_7076526	1/1	t0001	532	227	73	48	72	12	20	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	t0002	532	67	7	11	39	2	8	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	t0003	532	39	0	3	28	2	6	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	t0004	532	7	7	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	t0005	532	4	2	2	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	t0006	532	1	0	0	1	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	t0007	532	1	1	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP1_chr17_5509118_5589509	1/1	t0001	1189	342	52	69	171	12	36	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0002	1189	23	19	4	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0003	1189	8	8	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0004	1189	6	0	0	6	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0005	1189	6	1	3	0	0	2	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0006	1189	4	4	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0007	1189	3	3	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0008	1189	2	2	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0009	1189	1	0	0	0	1	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0010	1189	1	0	0	0	1	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0011	1189	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0012	1189	1	0	0	1	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0013	1189	1	0	0	0	0	1	copy fasta	NLRP1	chr17	5509118	5589509