JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NLRP1_chr17_5509118_5589509	0/0	t0014	1189	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0015	1189	1	0	0	0	0	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0016	1189	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0017	1189	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	t0018	1189	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP2B_chrX_57672067_57685260	1/1	t0001	3057	251	15	49	143	12	30	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0002	3057	29	27	1	0	0	1	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0003	3058	20	17	3	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0004	3057	7	0	5	0	1	1	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0005	3057	5	5	0	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0006	3057	4	2	2	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0007	3057	2	1	1	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0008	3057	2	2	0	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0009	3057	2	0	0	2	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0010	3057	2	2	0	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0011	3057	1	1	0	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0012	3057	1	1	0	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0013	3057	1	0	0	1	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0014	3057	1	0	1	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0015	3057	1	1	0	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0016	3057	1	0	0	0	0	1	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0017	3057	1	0	0	1	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0018	3057	1	0	0	0	0	1	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0019	3057	1	1	0	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0020	3057	1	0	0	1	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0021	3057	1	0	1	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0022	3057	1	0	0	1	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0023	3058	1	1	0	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0024	3057	1	1	0	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0025	3057	1	0	1	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2B_chrX_57672067_57685260	0/0	t0026	3058	1	1	0	0	0	0	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2_chr19_54961374_55006138	0/1	t0001	352	171	39	39	64	7	21	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0002	352	105	12	15	68	3	7	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0003	352	83	8	23	37	6	9	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0004	347	13	6	3	0	0	4	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0005	352	7	0	3	4	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0006	347	6	6	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0007	352	5	5	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0008	352	5	2	0	3	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0009	352	5	1	0	0	0	4	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0010	352	4	0	0	4	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0011	346	3	2	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0012	352	3	3	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0013	352	2	0	0	2	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0014	352	2	2	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0015	352	2	2	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0016	352	2	1	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0017	352	2	2	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0018	352	1	0	0	0	0	1	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0019	347	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138