JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NLRP2_chr19_54961374_55006138	0/0	t0020	352	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0021	347	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0022	352	1	0	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0023	347	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0024	352	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0025	346	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	t0026	258	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP3_chr1_247411173_247453817	0/0	t0001	1083	221	38	42	109	6	26	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/1	t0002	1083	130	11	14	86	8	10	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0003	1082	32	21	11	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0004	1083	13	4	9	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0005	1083	9	0	3	3	1	2	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0006	1082	5	2	2	0	0	1	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0007	1083	5	1	0	0	2	2	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0008	1082	5	5	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0009	1083	3	2	0	0	1	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0010	1083	2	2	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0011	1082	2	2	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0012	1083	2	2	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0013	1083	1	1	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0014	1083	1	0	0	1	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0015	1083	1	0	0	0	0	1	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0016	1082	1	1	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0017	1083	1	1	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0018	1083	1	0	0	1	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	1/0	t0019	1083	1	0	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0020	1082	1	1	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0021	1083	1	0	1	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0022	1083	1	1	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	t0023	1083	1	1	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP4_chr19_55831540_55886855	0/1	t0001	729	140	15	35	60	8	21	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0002	731	77	3	22	44	4	4	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0003	731	38	3	10	22	0	3	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	1/0	t0004	729	32	7	3	13	1	7	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0005	731	28	8	1	16	0	3	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0006	731	21	3	0	18	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0007	731	18	13	0	2	0	3	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0008	731	13	10	1	2	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0009	731	10	6	2	0	1	1	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0010	731	8	5	1	2	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0011	731	6	3	1	0	2	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0012	731	6	5	0	1	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0013	731	4	3	1	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0014	731	3	0	0	3	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0015	731	3	3	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0016	731	2	0	1	1	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0017	731	2	2	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0018	729	1	0	0	0	0	1	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0019	731	1	1	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0020	731	1	1	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855