JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NLRP4_chr19_55831540_55886855	0/0	t0021	731	1	0	0	1	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0022	729	1	1	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0023	729	1	1	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0024	731	1	0	1	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0025	729	1	0	0	1	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0026	731	1	1	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0027	729	1	0	1	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0028	731	1	1	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0029	731	1	1	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	t0030	731	1	0	0	0	0	1	copy fasta	NLRP4	chr19	55831540	55886855
NLRP5_chr19_55994726_56066810	1/1	t0001	283	300	77	64	108	14	35	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	t0002	283	89	5	10	60	4	10	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	t0003	283	6	6	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	t0004	283	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP6_chr11_273407_290388	1/1	t0001	248	446	94	82	202	16	50	copy fasta	NLRP6	chr11	273407	290388
NLRP7_chr19_54918515_54952530	0/0	t0001	327	397	81	76	174	18	48	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/1	t0002	327	18	15	2	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	t0003	327	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	t0004	327	1	0	0	1	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	t0005	327	1	0	0	1	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	t0006	327	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP8_chr19_55942832_55993629	0/0	t0001	790	39	2	8	18	6	5	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/1	t0002	786	31	2	9	17	1	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	1/0	t0003	788	17	0	2	11	2	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0004	788	17	0	2	13	0	2	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0005	800	15	6	5	1	0	3	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0006	780	14	2	3	9	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0007	796	14	3	7	1	1	2	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0008	790	11	3	0	7	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0009	788	11	3	0	7	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0010	780	11	4	6	0	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0011	774	11	4	5	0	1	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0012	802	11	6	2	1	0	2	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0013	792	10	3	1	5	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0014	794	9	6	0	3	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0015	798	9	1	2	2	1	3	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0016	789	7	1	2	2	2	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0017	793	6	0	0	4	0	2	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0018	798	6	3	0	2	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0019	792	6	0	2	3	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0020	788	5	0	0	4	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0021	794	5	2	0	2	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0022	792	5	3	1	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0023	782	4	3	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0024	804	4	1	0	0	0	3	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0025	796	3	2	0	0	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0026	778	3	1	0	2	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0027	776	3	3	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0028	796	3	0	0	2	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0029	790	3	3	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629