Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARMC10_chr7_103070140_103104759	0/0	t0073	1378	1	0	0	0	0	1	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0074	1381	1	1	0	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0075	1377	1	0	1	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0076	1371	1	0	0	0	0	1	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0077	1392	1	1	0	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0078	1384	1	1	0	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0079	1375	1	0	1	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0080	1370	1	0	1	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0081	1340	1	1	0	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	t0082	1374	1	1	0	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC12_chr6_35732032_35754079	1/1	t0001	287	395	89	70	181	13	40	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	t0002	287	33	1	8	13	3	8	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	t0003	287	10	8	2	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC1_chr8_65597458_65639177	0/0	t0001	2152	100	9	10	59	0	22	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/1	t0002	2153	94	3	15	62	5	8	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0003	2152	93	52	28	0	6	7	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0004	2153	49	9	9	20	7	4	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0005	2153	19	5	2	12	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0006	2152	8	8	0	0	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0007	2154	6	0	6	0	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0008	2153	3	0	0	3	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0009	2154	2	0	0	2	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0010	2152	2	0	2	0	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0011	2152	2	0	0	1	0	1	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0012	2153	1	0	1	0	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0013	2153	1	0	0	1	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0014	2152	1	0	1	0	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0015	2152	1	1	0	0	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	1/0	t0016	2152	1	0	0	0	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0017	2154	1	0	0	1	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0018	2153	1	1	0	0	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0019	2152	1	1	0	0	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0020	2152	1	0	0	0	0	1	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0021	2152	1	0	0	1	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0022	2152	1	0	0	0	0	1	copy fasta	ARMC1	chr8	65597458	65639177
ARMC1_chr8_65597458_65639177	0/0	t0023	2152	1	1	0	0	0	0	copy fasta	ARMC1	chr8	65597458	65639177
ARMC2_chr6_108843422_108979476	1/1	t0001	1131	223	50	51	87	10	23	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	t0002	1131	31	17	4	6	0	4	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	t0003	1131	22	7	3	7	1	4	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	t0004	1131	6	0	1	0	2	3	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	t0005	1131	2	2	0	0	0	0	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	t0006	1131	2	0	0	2	0	0	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	t0007	1131	1	1	0	0	0	0	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	t0008	1131	1	0	0	0	1	0	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	t0009	1131	1	1	0	0	0	0	copy fasta	ARMC2	chr6	108843422	108979476
ARMC2_chr6_108843422_108979476	0/0	t0010	1131	1	0	1	0	0	0	copy fasta	ARMC2	chr6	108843422	108979476
ARMC3_chr10_22923053_23043523	1/1	t0001	1099	260	54	49	121	6	28	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	t0002	1099	18	9	5	0	0	4	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	t0003	1099	9	9	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	t0004	1099	8	8	0	0	0	0	copy fasta	ARMC3	chr10	22923053	23043523