JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NLRP8_chr19_55942832_55993629	0/0	t0030	786	3	3	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0031	791	2	0	0	2	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0032	790	2	2	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0033	792	2	0	0	2	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0034	774	2	2	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0035	792	2	0	1	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0036	804	2	2	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0037	794	2	2	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0038	798	2	0	2	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0039	790	2	0	1	0	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0040	788	2	0	0	2	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0041	804	2	2	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0042	790	2	1	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0043	789	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0044	799	1	0	0	0	1	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0045	788	1	0	0	0	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0046	790	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0047	788	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0048	800	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0049	790	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0050	788	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0051	778	1	0	0	0	1	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0052	800	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0053	770	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0054	802	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0055	786	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0056	808	1	0	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0057	806	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0058	800	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0059	788	1	0	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0060	796	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0061	792	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0062	792	1	0	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0063	794	1	0	0	0	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0064	790	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0065	790	1	0	0	0	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0066	788	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0067	812	1	0	0	0	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0068	806	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0069	804	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0070	788	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0071	792	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	t0072	788	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP9_chr19_55703438_55743402	1/1	t0001	503	2	0	0	0	0	0	copy fasta	NLRP9	chr19	55703438	55743402
NLRX1_chr11_119163725_119189016	0/0	t0001	1204	203	51	23	100	5	24	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	1/1	t0002	1204	118	30	33	34	10	9	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	t0003	1204	71	14	5	38	1	13	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	t0004	1204	2	2	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	t0005	1204	2	1	1	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	t0006	1204	1	0	0	0	0	1	copy fasta	NLRX1	chr11	119163725	119189016