JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NLRX1_chr11_119163725_119189016	0/0	t0007	1204	1	0	0	0	0	1	copy fasta	NLRX1	chr11	119163725	119189016
NMBR_chr6_142069484_142152122	0/0	t0001	1908	144	43	27	58	4	12	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0002	1906	47	1	16	25	1	4	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/1	t0003	1907	46	2	7	23	4	9	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	1/0	t0004	1907	22	4	6	0	3	8	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0005	1906	16	15	1	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0006	1906	11	11	0	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0007	1907	10	3	1	4	0	2	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0008	1908	4	4	0	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0009	1909	4	3	1	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0010	1907	3	3	0	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0011	1909	3	0	0	3	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0012	1908	2	0	0	2	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0013	1908	2	0	2	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0014	1907	1	1	0	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0015	1927	1	0	0	1	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0016	1908	1	1	0	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0017	1907	1	0	0	1	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0018	1907	1	1	0	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0019	1907	1	0	0	1	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0020	1907	1	0	1	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0021	1908	1	0	0	1	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0022	1908	1	0	0	1	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0023	1908	1	0	0	1	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0024	1908	1	0	0	0	0	1	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0025	1908	1	0	1	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0026	1908	1	0	1	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0027	1907	1	1	0	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0028	1909	1	0	0	1	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	t0029	1907	1	1	0	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMB_chr15_84650132_84663199	1/1	t0001	290	347	94	52	151	15	33	copy fasta	NMB	chr15	84650132	84663199
NMB_chr15_84650132_84663199	0/0	t0002	290	54	1	21	26	1	5	copy fasta	NMB	chr15	84650132	84663199
NMB_chr15_84650132_84663199	0/0	t0003	290	3	0	0	3	0	0	copy fasta	NMB	chr15	84650132	84663199
NMB_chr15_84650132_84663199	0/0	t0004	290	3	2	1	0	0	0	copy fasta	NMB	chr15	84650132	84663199
NMB_chr15_84650132_84663199	0/0	t0005	290	1	1	0	0	0	0	copy fasta	NMB	chr15	84650132	84663199
NMD3_chr3_161216311_161257307	0/0	t0001	1517	132	43	19	50	7	13	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	t0002	1517	122	20	15	79	1	7	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	t0003	1517	58	11	7	34	0	6	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	1/1	t0004	1517	40	2	15	4	4	13	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	t0005	1517	26	0	10	16	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	t0006	1517	4	4	0	0	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	t0007	1517	3	2	1	0	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	t0008	1517	2	2	0	0	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	t0009	1517	2	2	0	0	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	t0010	1517	2	0	0	0	0	2	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	t0011	1517	1	0	0	1	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	t0012	1517	1	0	0	1	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	t0013	1517	1	0	0	1	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	t0014	1517	1	1	0	0	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	t0015	1517	1	0	1	0	0	0	copy fasta	NMD3	chr3	161216311	161257307