JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NMD3_chr3_161216311_161257307	0/0	t0016	1517	1	0	0	0	0	1	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	t0017	1517	1	1	0	0	0	0	copy fasta	NMD3	chr3	161216311	161257307
NME1_chr17_51148559_51167168	1/0	t0001	432	179	25	47	84	5	17	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/1	t0002	432	138	26	25	59	7	20	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	t0003	432	25	25	0	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	t0004	432	12	5	2	5	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	t0005	432	11	0	4	5	2	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	t0006	432	6	6	0	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	t0007	432	6	6	0	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	t0008	432	2	2	0	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	t0009	432	1	0	0	0	0	1	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	t0010	432	1	1	0	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	t0011	432	1	1	0	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	t0012	432	1	0	0	1	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	t0013	324	1	1	0	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME2_chr17_51161411_51176744	0/0	t0001	232	238	73	51	91	9	14	copy fasta	NME2	chr17	51161411	51176744
NME2_chr17_51161411_51176744	1/0	t0002	232	139	5	23	78	8	24	copy fasta	NME2	chr17	51161411	51176744
NME2_chr17_51161411_51176744	0/0	t0003	232	32	16	8	1	1	6	copy fasta	NME2	chr17	51161411	51176744
NME2_chr17_51161411_51176744	0/0	t0004	232	3	3	0	0	0	0	copy fasta	NME2	chr17	51161411	51176744
NME2_chr17_51161411_51176744	0/0	t0005	232	1	1	0	0	0	0	copy fasta	NME2	chr17	51161411	51176744
NME3_chr16_1765320_1776543	0/1	t0001	339	406	82	70	186	18	49	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	t0002	339	11	11	0	0	0	0	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	t0003	339	3	3	0	0	0	0	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	t0004	339	2	0	1	0	0	1	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	t0005	339	2	0	0	2	0	0	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	1/0	t0006	339	1	0	0	0	0	0	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	t0007	339	1	0	1	0	0	0	copy fasta	NME3	chr16	1765320	1776543
NME4_chr16_392199_405754	1/1	t0001	437	345	78	66	141	14	44	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	t0002	437	6	6	0	0	0	0	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	t0003	437	2	2	0	0	0	0	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	t0004	437	1	1	0	0	0	0	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	t0005	437	1	1	0	0	0	0	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	t0006	437	1	0	0	1	0	0	copy fasta	NME4	chr16	392199	405754
NME5_chr5_138110175_138144428	1/1	t0001	570	386	87	82	166	16	33	copy fasta	NME5	chr5	138110175	138144428
NME5_chr5_138110175_138144428	0/0	t0002	570	1	1	0	0	0	0	copy fasta	NME5	chr5	138110175	138144428
NME5_chr5_138110175_138144428	0/0	t0003	570	1	0	0	0	0	1	copy fasta	NME5	chr5	138110175	138144428
NME6_chr3_48287317_48306367	0/0	t0001	2343	162	31	36	67	7	21	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0002	2343	79	40	13	21	1	4	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0003	2344	59	5	15	31	2	6	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0004	2342	5	0	0	5	0	0	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0005	2343	3	3	0	0	0	0	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0006	2344	2	1	1	0	0	0	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0007	2344	2	1	1	0	0	0	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0008	2343	2	0	0	0	2	0	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0009	2342	2	1	0	1	0	0	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0010	2343	1	1	0	0	0	0	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0011	2343	1	1	0	0	0	0	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0012	2343	1	0	0	0	0	1	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0013	2343	1	0	0	1	0	0	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0014	2343	1	0	0	1	0	0	copy fasta	NME6	chr3	48287317	48306367