JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NME6_chr3_48287317_48306367	0/0	t0015	2343	1	0	0	1	0	0	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0016	2343	1	0	0	1	0	0	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	t0017	2343	1	0	0	1	0	0	copy fasta	NME6	chr3	48287317	48306367
NME7_chr1_169127531_169372797	1/1	t0001	342	197	67	52	45	12	19	copy fasta	NME7	chr1	169127531	169372797
NME7_chr1_169127531_169372797	0/0	t0002	342	102	13	7	65	0	17	copy fasta	NME7	chr1	169127531	169372797
NME7_chr1_169127531_169372797	0/0	t0003	342	1	0	1	0	0	0	copy fasta	NME7	chr1	169127531	169372797
NME7_chr1_169127531_169372797	0/0	t0004	342	1	1	0	0	0	0	copy fasta	NME7	chr1	169127531	169372797
NME7_chr1_169127531_169372797	0/0	t0005	342	1	1	0	0	0	0	copy fasta	NME7	chr1	169127531	169372797
NME8_chr7_37843597_37905397	0/0	t0001	542	212	41	28	112	5	26	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	t0002	542	88	34	18	23	7	6	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	t0003	542	51	2	12	26	3	8	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	t0004	542	28	0	8	17	1	2	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	t0005	542	4	4	0	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	t0006	542	2	2	0	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	t0007	542	2	2	0	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	t0008	542	1	1	0	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME9_chr3_138295999_138334851	0/1	t0001	1158	210	81	40	61	7	20	copy fasta	NME9	chr3	138295999	138334851
NME9_chr3_138295999_138334851	1/0	t0002	1158	55	9	11	21	5	8	copy fasta	NME9	chr3	138295999	138334851
NME9_chr3_138295999_138334851	0/0	t0003	1158	6	0	1	1	0	4	copy fasta	NME9	chr3	138295999	138334851
NME9_chr3_138295999_138334851	0/0	t0004	1158	3	0	0	3	0	0	copy fasta	NME9	chr3	138295999	138334851
NME9_chr3_138295999_138334851	0/0	t0005	1158	1	1	0	0	0	0	copy fasta	NME9	chr3	138295999	138334851
NME9_chr3_138295999_138334851	0/0	t0006	1158	1	1	0	0	0	0	copy fasta	NME9	chr3	138295999	138334851
NMI_chr2_151265470_151294668	1/0	t0001	306	261	66	35	129	8	22	copy fasta	NMI	chr2	151265470	151294668
NMI_chr2_151265470_151294668	0/0	t0002	306	111	2	27	66	3	13	copy fasta	NMI	chr2	151265470	151294668
NMI_chr2_151265470_151294668	0/0	t0003	306	29	14	2	11	1	1	copy fasta	NMI	chr2	151265470	151294668
NMI_chr2_151265470_151294668	0/1	t0004	306	5	1	2	0	0	1	copy fasta	NMI	chr2	151265470	151294668
NMI_chr2_151265470_151294668	0/0	t0005	306	2	0	0	2	0	0	copy fasta	NMI	chr2	151265470	151294668
NMI_chr2_151265470_151294668	0/0	t0006	306	1	0	0	0	0	1	copy fasta	NMI	chr2	151265470	151294668
NMI_chr2_151265470_151294668	0/0	t0007	306	1	1	0	0	0	0	copy fasta	NMI	chr2	151265470	151294668
NMNAT1_chr1_9938475_9990498	0/1	t0001	2895	74	5	20	27	4	17	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0002	2896	74	22	7	27	1	17	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0003	2895	56	8	10	34	0	4	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	1/0	t0004	2895	26	22	2	1	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0005	2895	20	0	1	19	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0006	2894	17	0	6	10	0	1	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0007	2895	7	6	1	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0008	2895	6	6	0	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0009	2896	5	5	0	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0010	2895	5	1	3	0	1	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0011	2895	3	0	0	0	0	3	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0012	2896	3	3	0	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0013	2895	2	0	0	2	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0014	2896	2	2	0	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0015	2895	2	2	0	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0016	2895	1	0	0	0	0	1	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0017	2896	1	0	0	0	0	1	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0018	2896	1	0	0	1	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0019	2895	1	1	0	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0020	2896	1	0	1	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0021	2895	1	1	0	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498