JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NMNAT1_chr1_9938475_9990498	0/0	t0022	2895	1	1	0	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0023	2895	1	0	0	1	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0024	2895	1	1	0	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0025	2895	1	0	1	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0026	2895	1	1	0	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	t0027	2913	1	1	0	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT2_chr1_183243237_183423380	0/0	t0001	4505	20	1	6	10	1	2	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	1/0	t0002	4518	19	6	5	3	3	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0003	4516	18	1	8	5	2	2	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0004	4520	13	5	3	3	2	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0005	4514	10	4	2	1	1	2	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0006	4505	9	1	0	7	1	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0007	4503	7	0	0	7	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0008	4507	7	0	2	0	4	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0009	4520	7	4	0	2	1	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0010	4503	6	0	5	0	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0011	4505	6	6	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0012	4522	6	1	2	1	0	2	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0013	4505	5	0	2	3	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0014	4510	5	0	0	5	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0015	4516	5	0	2	3	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0016	4512	5	5	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0017	4505	4	4	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0018	4518	4	0	1	1	1	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0019	4503	3	0	0	3	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0020	4512	3	1	0	2	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0021	4507	2	2	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0022	4509	2	2	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0023	4503	2	2	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0024	4507	2	2	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0025	4497	2	2	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0026	4509	2	2	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0027	4507	2	2	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0028	4505	2	2	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0029	4505	2	0	0	1	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0030	4503	2	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0031	4501	2	0	0	2	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0032	4507	2	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0033	4505	2	2	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0034	4509	2	0	0	0	0	2	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0035	4501	2	0	2	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0036	4522	2	0	0	0	0	2	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0037	4518	2	2	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0038	4516	2	0	0	2	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0039	4514	2	0	2	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0040	4516	2	0	1	1	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0041	4514	2	1	0	0	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0042	4520	2	2	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0043	4511	1	1	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0044	4519	1	1	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380