JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
NMNAT2_chr1_183243237_183423380	0/0	t0045	4505	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0046	4501	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0047	4511	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0048	4507	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0049	4493	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0050	4505	1	0	1	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0051	4503	1	0	0	1	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0052	4509	1	0	0	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0053	4507	1	0	0	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0054	4518	1	0	0	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0055	4543	1	0	0	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0056	4514	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0057	4505	1	0	1	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0058	4509	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0059	4505	1	0	0	1	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0060	4505	1	0	0	1	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0061	4513	1	0	0	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0062	4509	1	0	0	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0063	4507	1	0	1	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0064	4503	1	0	1	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0065	4505	1	0	1	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0066	4510	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0067	4505	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0068	4511	1	0	0	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0069	4507	1	0	0	1	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0070	4503	1	0	0	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0071	4510	1	0	0	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0072	4503	1	0	1	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0073	4502	1	0	0	1	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0074	4508	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0075	4514	1	0	0	1	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0076	4518	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0077	4522	1	0	1	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0078	4520	1	0	0	1	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/1	t0079	4518	1	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0080	4520	1	0	0	1	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0081	4512	1	0	0	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0082	4514	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0083	4508	1	0	0	1	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0084	4506	1	0	1	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0085	4506	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0086	4515	1	0	0	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0087	4513	1	0	0	0	1	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0088	4512	1	0	0	1	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0089	4518	1	0	1	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0090	4514	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0091	4514	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0092	4514	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0093	4510	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	t0094	4510	1	1	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380