JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NMNAT3_chr3_139555191_139682972	0/0	t0001	1265	216	49	38	94	11	24	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/1	t0002	1265	89	32	20	21	5	10	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	t0003	1265	5	2	3	0	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	t0004	1265	3	0	3	0	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	t0005	1265	2	2	0	0	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	t0006	1265	1	1	0	0	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	1/0	t0007	1265	1	0	0	0	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	t0008	1265	1	0	0	1	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	t0009	1265	1	0	0	1	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	t0010	1265	1	0	0	1	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	t0011	1265	1	0	0	1	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	t0012	1265	1	0	0	1	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMRAL1_chr16_4456694_4479625	0/0	t0001	193	323	54	51	165	13	40	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/1	t0002	193	24	16	5	1	1	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	t0003	193	20	20	0	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	t0004	193	3	3	0	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	t0005	193	1	1	0	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	t0006	193	1	1	0	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	t0007	193	1	1	0	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRK1_chr9_75055577_75093155	0/0	t0001	1131	83	27	15	32	2	7	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0002	1155	81	15	16	41	2	7	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0003	1151	64	13	5	37	2	7	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0004	1147	34	0	10	18	1	5	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0005	1147	26	1	12	6	1	6	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0006	1157	16	4	1	8	0	3	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	1/0	t0007	1155	15	0	6	0	3	5	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0008	1131	12	6	4	0	1	1	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0009	1153	12	0	2	8	1	1	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0010	1147	8	0	0	8	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0011	1159	7	5	1	1	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0012	1155	5	5	0	0	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0013	1153	5	1	0	2	1	1	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/1	t0014	1147	5	1	2	0	1	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0015	1151	3	0	0	3	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0016	1159	3	1	2	0	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0017	1149	3	0	0	1	0	2	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0018	1155	3	1	1	0	1	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0019	1149	3	3	0	0	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0020	1131	2	2	0	0	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0021	1157	2	2	0	0	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0022	1161	2	2	0	0	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0023	1161	2	1	0	1	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0024	1151	2	0	0	2	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0025	1133	2	0	0	2	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0026	1153	2	2	0	0	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0027	1147	2	0	0	2	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0028	1149	2	0	0	2	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0029	1145	2	0	0	0	2	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0030	1147	2	0	0	0	0	2	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0031	1153	1	0	1	0	0	0	copy fasta	NMRK1	chr9	75055577	75093155