JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NMRK1_chr9_75055577_75093155	0/0	t0032	1147	1	0	0	1	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0033	1147	1	0	0	1	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0034	1145	1	0	0	1	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0035	1147	1	0	1	0	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0036	1145	1	0	0	0	0	1	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0037	1131	1	0	1	0	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	t0038	1155	1	0	0	1	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK2_chr19_3928069_3947416	1/1	t0001	468	358	66	74	164	15	37	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	t0002	470	31	17	8	2	1	3	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	t0003	470	6	6	0	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	t0004	471	4	4	0	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	t0005	470	3	3	0	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	t0006	469	1	1	0	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	t0007	468	1	1	0	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMS_chr2_100465482_100488280	1/1	t0001	24	395	98	74	164	12	45	copy fasta	NMS	chr2	100465482	100488280
NMS_chr2_100465482_100488280	0/0	t0002	24	1	0	0	0	0	1	copy fasta	NMS	chr2	100465482	100488280
NMT1_chr17_45056317_45114016	0/1	t0001	3391	64	2	11	39	4	7	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0002	3391	62	13	9	33	0	7	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0003	3391	46	29	4	6	2	5	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0004	3391	34	1	1	29	1	2	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0005	3390	30	3	7	17	1	2	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	1/0	t0006	3391	21	0	10	2	3	5	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0007	3390	12	0	3	6	0	3	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0008	3391	10	8	2	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0009	3391	8	0	6	2	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0010	3391	8	6	1	0	0	1	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0011	3391	6	6	0	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0012	3391	5	0	5	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0013	3391	5	0	3	0	2	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0014	3391	5	0	0	0	0	5	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0015	3390	4	1	1	0	0	2	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0016	3391	4	4	0	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0017	3391	4	1	3	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0018	3391	3	1	1	0	0	1	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0019	3391	3	0	2	0	0	1	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0020	3391	3	0	0	3	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0021	3390	3	0	2	0	0	1	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0022	3391	3	1	2	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0023	3391	2	0	0	2	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0024	3391	2	0	2	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0025	3391	2	0	0	0	0	2	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0026	3391	2	0	0	2	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0027	3391	2	0	0	2	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0028	3391	2	2	0	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0029	3391	2	2	0	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0030	3391	2	1	1	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0031	3391	2	2	0	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0032	3391	2	0	2	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0033	3391	2	0	0	0	2	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0034	3391	1	0	1	0	0	0	copy fasta	NMT1	chr17	45056317	45114016