JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NMT1_chr17_45056317_45114016	0/0	t0035	3391	1	0	1	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0036	3391	1	1	0	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0037	3391	1	1	0	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0038	3391	1	0	1	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0039	3391	1	1	0	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0040	3391	1	0	1	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0041	3391	1	1	0	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0042	3391	1	1	0	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0043	3391	1	0	0	1	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0044	3391	1	0	0	0	0	1	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0045	3390	1	0	0	1	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0046	3390	1	0	0	1	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0047	3390	1	0	0	1	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0048	3391	1	1	0	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0049	3391	1	1	0	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0050	3391	1	0	0	0	1	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0051	3391	1	0	0	1	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0052	3391	1	0	0	0	0	1	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0053	3391	1	1	0	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	t0054	3391	1	1	0	0	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT2_chr10_15100770_15173693	0/0	t0001	3506	120	11	28	62	6	13	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0002	3505	17	4	2	10	0	1	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0003	3506	12	2	4	3	2	1	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0004	3506	11	5	1	3	0	2	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0005	3507	10	10	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0006	3509	9	8	1	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	1/1	t0007	3507	8	0	3	1	1	1	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0008	3507	7	0	0	7	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0009	3505	7	5	2	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0010	3503	6	6	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0011	3507	6	6	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0012	3508	5	2	1	0	2	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0013	3508	4	4	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0014	3508	4	4	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0015	3507	3	2	1	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0016	3507	2	2	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0017	3508	2	2	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0018	3507	2	2	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0019	3509	2	2	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0020	3506	2	0	2	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0021	3506	2	0	0	2	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0022	3506	2	1	1	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0023	3507	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0024	3507	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0025	3506	1	0	1	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0026	3507	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0027	3506	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0028	3509	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0029	3506	1	0	0	0	0	1	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0030	3508	1	0	0	1	0	0	copy fasta	NMT2	chr10	15100770	15173693