JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NMT2_chr10_15100770_15173693	0/0	t0031	3509	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0032	3508	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0033	3508	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0034	3506	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0035	3507	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0036	3506	1	0	0	1	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0037	3507	1	0	0	1	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0038	3506	1	0	0	0	0	1	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0039	3506	1	0	0	1	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0040	3506	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0041	3506	1	0	0	0	1	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0042	3506	1	0	1	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0043	3507	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0044	3506	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0045	3506	1	0	0	1	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0046	3506	1	0	0	0	0	1	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0047	3506	1	0	1	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0048	3505	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0049	3506	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0050	3506	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0051	3505	1	0	1	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0052	3507	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0053	3506	1	0	0	0	0	1	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0054	3493	1	0	0	1	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	t0055	3506	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMUR1_chr2_231518187_231535445	1/1	t0001	1941	221	53	43	94	12	17	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	t0002	1939	138	7	22	93	1	15	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	t0003	1941	21	4	6	0	4	7	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	t0004	1937	17	7	0	7	0	3	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	t0005	1941	15	7	5	0	1	2	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	t0006	1941	8	8	0	0	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	t0007	1941	2	2	0	0	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	t0008	1939	1	0	0	1	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	t0009	1939	1	0	0	1	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	t0010	1941	1	1	0	0	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	t0011	1941	1	1	0	0	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	t0012	1941	1	0	0	1	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	t0013	1941	1	0	0	1	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR2_chr5_152386546_152410279	1/1	t0001	812	326	71	51	155	13	34	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	t0002	811	41	3	26	3	1	8	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	t0003	813	37	11	1	19	2	4	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	t0004	812	24	4	0	20	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	t0005	813	9	3	0	4	0	2	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	t0006	811	2	1	0	1	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	t0007	812	2	0	0	2	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	t0008	814	1	1	0	0	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	t0009	812	1	1	0	0	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	t0010	812	1	0	0	1	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	t0011	812	1	1	0	0	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	t0012	812	1	0	0	1	0	0	copy fasta	NMUR2	chr5	152386546	152410279